CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G210400
(
Gossypium raimondii
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Gorai.013G210400
T258510_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.711
0.711
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G210400.1
MADS box
10
56
YITNDSKRKTTYKKSTKGLVKKVHELTTLCGIETCAIIHSPDFDSQP
Links
Other
MADS box
family TFs
Other
Gossypium raimondii
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACUA027038
Anopheles culicifacies
ACUA027038
N
ASTEI03346
Anopheles stephensi
ASTEI03346
N