orange1.1g027470m.g (Citrus sinensis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 orange1.1g027470m.g T258797_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.896 0.896
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.833 0.833
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.812 0.812
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.812 0.812
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.812 0.812
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.792 0.792
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.771 0.771
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.708 0.708
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.708 0.708
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g027470m MADS box 10 57

Links

Other MADS box family TFs
Other Citrus sinensis TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29648.m001978 Ricinus communis 29648.m001978 I 0.771
29782.m000119 Ricinus communis 29782.m000119 I 0.896
AGL20 Arabidopsis lyrata scaffold_403512.1 I 0.708
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.875
AMTR_s00001p00266470 Amborella trichopoda AMTR_s00001p00266470 I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.833
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.708
AP3 Arabidopsis thaliana AT3G54340 D 0.812
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.812
AP3 Populus trichocarpa POPTR_0002s02990 I 0.771
AP3 Vitis vinifera VIT_18s0001g13460 I 0.875
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.792
Aquca_006_00074 Aquilegia coerulea Aquca_006_00074 I 0.750
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.792
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.792
Bo1g157450 Brassica oleracea Bo1g157450 I 0.708
Bo3g038880 Brassica oleracea Bo3g038880 I 0.708
Bo4g120010 Brassica oleracea Bo4g120010 I 0.792
Bo4g195720 Brassica oleracea Bo4g195720 I 0.708
Bo5g152700 Brassica oleracea Bo5g152700 I 0.708
Bo8g083600 Brassica oleracea Bo8g083600 I 0.792
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.812
Bostr.12659s0367 Boechera stricta Bostr.12659s0367 I 0.708
Bostr.1460s0147 Boechera stricta Bostr.1460s0147 I 0.708
Bostr.25993s0208 Boechera stricta Bostr.25993s0208 I 0.708
Bra000393 Brassica rapa Bra000393 I 0.708
Bra007067 Brassica rapa Bra007067 I 0.792
Bra014822 Brassica rapa Bra014822 I 0.792
Bra021470 Brassica rapa Bra021470 I 0.708
Bra039170 Brassica rapa Bra039170 I 0.708
Bra039324 Brassica rapa Bra039324 I 0.708
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.792
Cagra.0050s0134 Capsella grandiflora Cagra.0050s0134 I 0.708
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.812
Cagra.1194s0071 Capsella grandiflora Cagra.1194s0071 I 0.708
Cagra.6677s0007 Capsella grandiflora Cagra.6677s0007 I 0.708
CAL Arabidopsis thaliana AT1G26310 I 0.708
CAL Arabidopsis lyrata scaffold_102909.1 I 0.708
Carubv10011954m.g Capsella rubella Carubv10011954m.g I 0.708
Carubv10014470m.g Capsella rubella Carubv10014470m.g I 0.708
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.812
Carubv10024046m.g Capsella rubella Carubv10024046m.g I 0.708
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.708
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.958
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.750
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.958
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.792
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.833
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.833
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.833
Ca_01994 Cicer arietinum Ca_01994 I 0.854
Ca_03887 Cicer arietinum Ca_03887 I 0.729
Ca_04909 Cicer arietinum Ca_04909 I 0.875
Ca_13111 Cicer arietinum Ca_13111 I 0.750
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.875
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.854
chr4.CM0046.610.nc Lotus japonicus chr4.CM0046.610.nc I 0.708
chr4.CM0126.630.nc Lotus japonicus chr4.CM0126.630.nc I 0.708
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.833
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.729
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.750
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.750
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.979
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.708
Cla021117 Citrullus lanatus Cla021117 I 0.896
Cla023547 Citrullus lanatus Cla023547 I 0.750
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.750
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.896
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.708
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.708
estExt_gwp_gw1.C_1630046 Physcomitrella patens estExt_gwp_gw1.C_1630046 I 0.729
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.729
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.708
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.708
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.833
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.771
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.708
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.771
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.938
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.938
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.708
F775_30609 Aegilops tauschii F775_30609 I 0.724
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.708
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.708
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.750
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.729
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.854
gene24852-v1.0-hybrid Fragaria vesca gene24852-v1.0-hybrid I 0.708
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.854
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.854
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.729
GLYMA04G43640 Glycine max GLYMA04G43640 I 0.708
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.875
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.729
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.854
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.729
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.729
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.771
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.896
Gorai.004G155700 Gossypium raimondii Gorai.004G155700 I 0.708
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.792
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.938
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.812
Gorai.011G035500 Gossypium raimondii Gorai.011G035500 I 0.708
GRMZM2G055782 Zea mays GRMZM2G055782 I 0.708
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.792
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.833
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.833
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.729
LjT13A22.130.nc Lotus japonicus LjT13A22.130.nc I 0.708
LPERR04G11770 Leersia perrieri LPERR04G11770 I 0.708
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.792
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.833
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.708
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.833
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.854
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.708
MADS16 Oryza sativa OS06G0712700 D 0.792
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.812
MADS50 Oryza sativa OS03G0122600 D 0.708
MDP0000133037 Malus domestica MDP0000133037 I 0.896
MDP0000184294 Malus domestica MDP0000184294 I 0.896
MDP0000224779 Malus domestica MDP0000224779 I 0.896
MDP0000242009 Malus domestica MDP0000242009 I 0.708
MDP0000250080 Malus domestica MDP0000250080 I 0.708
MDP0000315938 Malus domestica MDP0000315938 I 0.896
MDP0000324166 Malus domestica MDP0000324166 I 0.708
mgf000046m Mimulus guttatus mgf000046m I 0.729
mgf003143m Mimulus guttatus mgf003143m I 0.708
mgf006158m Mimulus guttatus mgf006158m I 0.708
mgf008207m Mimulus guttatus mgf008207m I 0.708
mgf015533m Mimulus guttatus mgf015533m I 0.812
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.792
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.729
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.875
MTR_4g102530 Medicago truncatula MTR_4g102530 I 0.708
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.854
OB03G11760 Oryza brachyantha OB03G11760 I 0.708
OB06G35020 Oryza brachyantha OB06G35020 I 0.792
OBART03G01800 Oryza barthii OBART03G01800 I 0.708
OBART06G27230 Oryza barthii OBART06G27230 I 0.792
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.708
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.792
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.792
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.708
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.708
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.792
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.708
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.792
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.708
OPUNC04G12890 Oryza punctata OPUNC04G12890 I 0.708
OPUNC06G24880 Oryza punctata OPUNC06G24880 I 0.729
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.750
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.708
orange1.1g036452m.g Citrus sinensis orange1.1g036452m.g I 0.708
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.833
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.750
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.729
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.708
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.792
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.708
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.792
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.792
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.792
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.833
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.792
PGSC0003DMG400017295 Solanum tuberosum PGSC0003DMG400017295 I 0.708
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.750
Pm004718 Prunus mume Pm004718 I 0.750
Pm006266 Prunus mume Pm006266 I 0.833
Pm010346 Prunus mume Pm010346 I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
Pm026712 Prunus mume Pm026712 I 0.896
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.708
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.958
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.708
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.917
POPTR_0012s10190 Populus trichocarpa POPTR_0012s10190 I 0.729
POPTR_0013s09960 Populus trichocarpa POPTR_0013s09960 I 0.708
PRUPE_ppa010595mg Prunus persica PRUPE_ppa010595mg I 0.708
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.896
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.750
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.854
Q38742_ANTMA Antirrhinum majus Q38742_ANTMA D 0.708
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.833
Q8VWZ2_MALDO Malus domestica Q8VWZ2_MALDO D 0.708
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.896
Q9ATE3_PETHY Petunia x hybrida Q9ATE3_PETHY D 0.708
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.771
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.729
SapurV1A.0383s0080 Salix purpurea SapurV1A.0383s0080 I 0.708
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.896
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.917
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.938
SapurV1A.2206s0010 Salix purpurea SapurV1A.2206s0010 I 0.708
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.792
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708
SEP2 Arabidopsis thaliana AT3G02310 D 0.708
SEP2 Arabidopsis lyrata scaffold_300166.1 I 0.708
Si007221m.g Setaria italica Si007221m.g I 0.792
SOC1 Arabidopsis thaliana AT2G45660 D 0.708
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.833
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.792
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.771
Solyc07g055920.2 Solanum lycopersicum Solyc07g055920.2 I 0.708
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.708
squamosa Antirrhinum majus CAA45228.1 D 0.708
TCM_000266 Theobroma cacao TCM_000266 I 0.896
TCM_034148 Theobroma cacao TCM_034148 I 0.792
TCM_035212 Theobroma cacao TCM_035212 I 0.771
Thhalv10001632m.g Eutrema salsugineum Thhalv10001632m.g I 0.708
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.792
Thhalv10021390m.g Eutrema salsugineum Thhalv10021390m.g I 0.708
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.792
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.792
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.792
TT16 Vitis vinifera VIT_01s0011g01560 I 0.729
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 1.000
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I 0.708