AMTR_s00010p00252990 (Amborella trichopoda)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AMTR_s00010p00252990 T266147_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB88
M07042_2.00 		Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN		 Dap-seq
OMalley et al.(2016)
MYB88_col_a 		0.689 0.802
MYB88
M07043_2.00 		Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN		 Dap-seq
OMalley et al.(2016)
MYB88_colamp_a 		0.689 0.802
MYB88
M11038_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB88_01 		0.689 0.802
MYB124
M01267_2.00 		Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN		 PBM
Lambert et al.(2019)
pTH11556 		0.682 0.802
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM94394 Myb 19 64
ERM94394 Myb 70 114

Links

Other Myb/SANT family TFs
Other Amborella trichopoda TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29736.m002013 Ricinus communis 29736.m002013 I 0.733
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.714
Bo2g136560 Brassica oleracea Bo2g136560 I 0.664
Bo5g019500 Brassica oleracea Bo5g019500 I 0.700
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.689
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.667
Bra019658 Brassica rapa Bra019658 I 0.700
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I 0.668
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.667
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.667
Carubv10017119m.g Capsella rubella Carubv10017119m.g I 0.668
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.722
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.722
Ca_18779 Cicer arietinum Ca_18779 I 0.752
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.752
Cla010333 Citrullus lanatus Cla010333 I 0.718
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.718
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.763
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.731
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.714
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.682
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.731
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.722
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.739
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.748
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.714
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.688
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.752
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I 0.705
LPERR07G19800 Leersia perrieri LPERR07G19800 I 0.690
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.687
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.687
MDP0000165523 Malus domestica MDP0000165523 I 0.722
MDP0000210970 Malus domestica MDP0000210970 I 0.706
mgf009409m Mimulus guttatus mgf009409m I 0.676
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.752
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.712
MYB124 Arabidopsis thaliana AT1G14350 D 0.682
MYB88 Arabidopsis thaliana AT2G02820 D 0.689
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.689
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I 0.690
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.752
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.735
PK05123.1 Cannabis sativa PK05123.1 I 0.752
Pm006532 Prunus mume Pm006532 I 0.714
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.722
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.722
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.714
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.722
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.722
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.735
TCM_011776 Theobroma cacao TCM_011776 I 0.692
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.672
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.700
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.697