Bra001202 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra001202 T267692_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.906 0.978
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.766 0.839
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.766 0.839
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.712 0.774
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.712 0.774
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.674 0.817
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.671 0.667
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.668 0.742
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.668 0.742
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.668 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001202.1-P Myb 21 68
Bra001202.1-P Myb 74 119

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

539 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL007190 Aedes aegypti AAEL007190 I 0.000
AALB001133 Anopheles albimanus AALB001133 I 0.000
Aan_R004022 Calypte anna Aan_R004022 I 0.000
AARA003887 Anopheles arabiensis AARA003887 I 0.000
AATE003142 Anopheles atroparvus AATE003142 I 0.000
ACOM026748 Anopheles coluzzii ACOM026748 I 0.000
ACYPI007601 Acyrthosiphon pisum ACYPI007601 I 0.000
ADAC006988 Anopheles darlingi ADAC006988 I 0.000
AEPI011067 Anopheles epiroticus AEPI011067 I 0.000
AFAF011447 Anopheles farauti AFAF011447 I 0.000
Afo_R007066 Aptenodytes forsteri Afo_R007066 I 0.000
Alligator_sinensis_CCG020979.1 Alligator sinensis Alligator_sinensis_CCG020979.1 I 0.000
AMEM000983 Anopheles merus AMEM000983 I 0.000
ANCCAN_05510 Ancylostoma caninum ANCCAN_05510 I 0.000
ANCCEY_01724 Ancylostoma ceylanicum ANCCEY_01724 I 0.000
ASIM_0001387401 Anisakis simplex ASIM_0001387401 N 0.000
ASU_07884 Ascaris suum ASU_07884 I 0.000
BGLB004019 Biomphalaria glabrata BGLB004019 I 0.000
Bm4485 Brugia malayi Bm4485 I 0.000
BXY_0327700 Bursaphelenchus xylophilus BXY_0327700 I 0.000
CapteG171557 Capitella teleta CapteG171557 I 0.000
CBG14155 Caenorhabditis briggsae CBG14155 I 0.000
CBN22518 Caenorhabditis brenneri CBN22518 I 0.000
CGI_10007932 Crassostrea gigas CGI_10007932 I 0.000
CGOC_0000187501 Cylicostephanus goldi CGOC_0000187501 I 0.000
CJA07370 Caenorhabditis japonica CJA07370 I 0.000
Cmyd_10012017 Chelonia mydas Cmyd_10012017 I 0.000
CRE00427 Caenorhabditis remanei CRE00427 I 0.000
csin100859 Clonorchis sinensis csin100859 I 0.000
D917_05007 Trichinella nativa D917_05007 I 0.000
D918_07443 Trichuris suis D918_07443 I 0.000
DAPPUDRAFT_106791 Daphnia pulex DAPPUDRAFT_106791 I 0.000
DICVIV_11193 Dictyocaulus viviparus DICVIV_11193 I 0.000
ECPE_0000243601 Echinostoma caproni ECPE_0000243601 I 0.000
EFV56045 Trichinella spiralis EFV56045 I 0.000
ENSAMEG00000008835 Ailuropoda melanoleuca ENSAMEG00000008835 I 0.000
ENSAMXG00000017872 Astyanax mexicanus ENSAMXG00000017872 I 0.000
ENSBTAP00000048604-D1 Bos grunniens ENSBTAP00000048604-D1 I 0.000
ENSCSAG00000013721 Chlorocebus sabaeus ENSCSAG00000013721 I 0.000
ENSFALG00000009699 Ficedula albicollis ENSFALG00000009699 I 0.000
ENSGMOG00000008342 Gadus morhua ENSGMOG00000008342 I 0.000
ENSGMOG00000019194 Gadus morhua ENSGMOG00000019194 I 0.000
ENSLACG00000022378 Latimeria chalumnae ENSLACG00000022378 I 0.000
ENSLOCG00000014973 Lepisosteus oculatus ENSLOCG00000014973 I 0.000
ENSMEUG00000016597 Macropus eugenii ENSMEUG00000016597 I 0.000
ENSMPUG00000017103 Mustela putorius furo ENSMPUG00000017103 I 0.000
ENSNLEG00000013807 Nomascus leucogenys ENSNLEG00000013807 I 0.000
ENSOARG00000018808 Ovis aries ENSOARG00000018808 I 0.000
ENSONIG00000007109 Oreochromis niloticus ENSONIG00000007109 I 0.000
ENSONIG00000015396 Oreochromis niloticus ENSONIG00000015396 I 0.000
ENSPANG00000016257 Papio anubis ENSPANG00000016257 I 0.000
ENSPFOG00000006106 Poecilia formosa ENSPFOG00000006106 I 0.000
ENSPFOG00000006516 Poecilia formosa ENSPFOG00000006516 I 0.000
ENSPMAG00000009792 Petromyzon marinus ENSPMAG00000009792 I 0.000
ENSSTOG00000012080 Ictidomys tridecemlineatus ENSSTOG00000012080 I 0.000
ENSTGUG00000004498 Taeniopygia guttata ENSTGUG00000004498 I 0.000
ENSXMAG00000010311 Xiphophorus maculatus ENSXMAG00000010311 I 0.000
ENSXMAG00000015842 Xiphophorus maculatus ENSXMAG00000015842 I 0.000
EVEC_0000564801 Enterobius vermicularis EVEC_0000564801 I 0.000
e_gw.107.44.1 Branchiostoma floridae e_gw.107.44.1 I 0.000
e_gw.324.28.1 Branchiostoma floridae e_gw.324.28.1 I 0.000
fax-1 Caenorhabditis elegans WBGene00001400 I 0.000
GA30480 Drosophila pseudoobscura FBgn0264774 D 0.000
GB49738 Apis mellifera GB49738 I 0.000
GD11109 Drosophila simulans FBgn0182865 I 0.000
GE13645 Drosophila yakuba FBgn0231304 I 0.000
genemark-nMf.1.1.scaf00188-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00188-processed-gene-0.4 I 0.000
GF13031 Drosophila ananassae FBgn0090064 I 0.000
Gfo_R008863 Geospiza fortis Gfo_R008863 I 0.000
GH20426 Drosophila grimshawi FBgn0127889 I 0.000
GI19610 Drosophila mojavensis FBgn0142347 I 0.000
GJ14974 Drosophila virilis FBgn0202177 I 0.000
GK20892 Drosophila willistoni FBgn0222886 I 0.000
GL17752 Drosophila persimilis FBgn0155355 I 0.000
GPLIN_000669800 Globodera pallida GPLIN_000669800 I 0.000
Hba_15323 Heterorhabditis bacteriophora Hba_15323 I 0.000
HCOI01781300 Haemonchus contortus HCOI01781300 I 0.000
HelroG139475 Helobdella robusta HelroG139475 I 0.000
HHAL007294-PA Halyomorpha halys HHAL007294-PA I 0.000
Hr51 Drosophila melanogaster FBgn0034012 D 0.000
Hsal_07902--XP_396999.3_APIME Harpegnathos saltator Hsal_07902--XP_396999.3_APIME I 0.000
ISCW010891 Ixodes scapularis ISCW010891 I 0.000
ISCW019467 Ixodes scapularis ISCW019467 I 0.000
L596_g2163 Steinernema carpocapsae L596_g2163 I 0.000
L798_02234 Zootermopsis nevadensis L798_02234 I 0.000
L889_g11978 Steinernema feltiae L889_g11978 I 0.000
L892_g9366 Steinernema scapterisci L892_g9366 I 0.000
L893_g28297 Steinernema glaseri L893_g28297 I 0.000
L898_g15355 Steinernema monticolum L898_g15355 I 0.000
LDEC022044 Leptinotarsa decemlineata LDEC022044 I 0.000
LOAG_06205 Loa loa LOAG_06205 I 0.000
LotgiG137595 Lottia gigantea LotgiG137595 I 0.000
MDOA010244 Musca domestica MDOA010244 I 0.000
MhA1_Contig1792.frz3.gene6 Meloidogyne hapla MhA1_Contig1792.frz3.gene6 I 0.000
Myotis_brandtii_NR2E3_10027281 Myotis brandtii Myotis_brandtii_NR2E3_10027281 I 0.000
nAv.1.0.1.g01891 Acanthocheilonema viteae nAv.1.0.1.g01891 I 0.000
nDi.2.2.2.g10236 Dirofilaria immitis nDi.2.2.2.g10236 I 0.000
NEMVEDRAFT_v1g169225 Nematostella vectensis NEMVEDRAFT_v1g169225 I 0.000
nLs.2.1.2.g01701 Litomosoides sigmodontis nLs.2.1.2.g01701 I 0.000
nOo.2.0.1.g01040 Onchocerca ochengi nOo.2.0.1.g01040 I 0.000
nOo.2.0.1.g10097 Onchocerca ochengi nOo.2.0.1.g10097 I 0.000
nOo.2.0.1.g11611 Onchocerca ochengi nOo.2.0.1.g11611 I 0.000
NR2E3 Anolis carolinensis ENSACAG00000011910 I 0.000
NR2E3 Bos taurus ENSBTAG00000014236 I 0.000
NR2E3 Callithrix jacchus ENSCJAG00000018552 I 0.000
NR2E3 Cavia porcellus ENSCPOG00000008974 I 0.000
nr2e3 Danio rerio ENSDARG00000045904 I 0.000
NR2E3 Equus caballus ENSECAG00000015192 I 0.000
NR2E3 Felis catus ENSFCAG00000031082 I 0.000
NR2E3 Homo sapiens ENSG00000278570 D 0.000
nr2e3 Gasterosteus aculeatus ENSGACG00000004739 I 0.000
NR2E3 Gasterosteus aculeatus ENSGACG00000017060 I 0.000
NR2E3 Gallus gallus ENSGALG00000002093 I 0.000
NR2E3 Gorilla gorilla ENSGGOG00000004383 I 0.000
NR2E3 Meleagris gallopavo ENSMGAG00000001449 I 0.000
NR2E3 Myotis lucifugus ENSMLUG00000008408 I 0.000
NR2E3 Macaca mulatta ENSMMUG00000019276 I 0.000
NR2E3 Monodelphis domestica ENSMODG00000001949 I 0.000
Nr2e3 Mus musculus ENSMUSG00000032292 D 0.000
NR2E3 Otolemur garnettii ENSOGAG00000006128 I 0.000
NR2E3 Ochotona princeps ENSOPRG00000006427 I 0.000
NR2E3 Oryzias latipes ENSORLG00000000011 I 0.000
nr2e3 Oryzias latipes ENSORLG00000007175 I 0.000
NR2E3 Procavia capensis ENSPCAG00000014733 I 0.000
NR2E3 Pan troglodytes ENSPTRG00000007242 I 0.000
NR2E3 Pteropus vampyrus ENSPVAG00000009088 I 0.000
Nr2e3 Rattus norvegicus ENSRNOG00000050690 I 0.000
NR2E3 Sus scrofa ENSSSCG00000004978 I 0.000
NR2E3 Tupaia belangeri ENSTBEG00000011672 I 0.000
NR2E3 Tetraodon nigroviridis ENSTNIG00000005150 I 0.000
NR2E3 Takifugu rubripes ENSTRUG00000015582 I 0.000
NR2E3 Tursiops truncatus ENSTTRG00000009410 I 0.000
nr2e3 Xenopus tropicalis XB-GENE-485801 I 0.000
NV14480 Nasonia vitripennis NV14480 I 0.000
OESDEN_00114 Oesophagostomum dentatum OESDEN_00114 I 0.000
OFLC_0000991001 Onchocerca flexuosa OFLC_0000991001 I 0.000
Ogr12843 Ophisaurus gracilis Ogr12843 I 0.000
PHUM039420 Pediculus humanus PHUM039420 I 0.000
PHUM331460 Pediculus humanus PHUM331460 I 0.000
Ppa-fax-1 Pristionchus pacificus PPA00264 I 0.000
Ppa-nhr-3 Pristionchus pacificus PPA28597 I 0.000
PTRK_0000446300 Parastrongyloides trichosuri PTRK_0000446300 I 0.000
Pvit_13689 Pogona vitticeps Pvit_13689 I 0.000
RPRC002557 Rhodnius prolixus RPRC002557 I 0.000
RSKR_0000698500 Rhabditophanes kr3021 RSKR_0000698500 I 0.000
Sakowv30007027m.g Saccoglossus kowalevskii Sakowv30007027m.g I 0.000
SBAD_0000006401 Soboliphyme baturini SBAD_0000006401 I 0.000
scaffold296-EXSNAP2012.8 Pristionchus exspectatus scaffold296-EXSNAP2012.8 I 0.000
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I 0.000
SMAR005628 Strigamia maritima SMAR005628 I 0.000
SMAR006008 Strigamia maritima SMAR006008 I 0.000
Smp_167770 Schistosoma mansoni Smp_167770 I 0.000
SMRZ_0000841101 Schistosoma margrebowiei SMRZ_0000841101 I 0.000
SMTD_0001566201 Schistosoma mattheei SMTD_0001566201 I 0.000
SMU15029049 Schmidtea mediterranea SMU15029049 I 0.000
SMU15038222 Schmidtea mediterranea SMU15038222 I 0.000
SMUV_0000245701 Syphacia muris SMUV_0000245701 I 0.000
snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf29070-processed-gene-0.1 I 0.000
SPAL_0001117000 Strongyloides papillosus SPAL_0001117000 I 0.000
SPU_014405 Strongylocentrotus purpuratus SPU_014405 I 0.000
SSTP_0000090600 Strongyloides stercoralis SSTP_0000090600 I 0.000
SVE_0933400 Strongyloides venezuelensis SVE_0933400 I 0.000
TC009378 Tribolium castaneum TC009378 I 0.000
TCLT_0000456401 Thelazia callipaeda TCLT_0000456401 I 0.000
TCNE_0001716001 Toxocara canis TCNE_0001716001 I 0.000
TELCIR_21617 Teladorsagia circumcincta TELCIR_21617 I 0.000
tetur01g11040 Tetranychus urticae tetur01g11040 I 0.000
tetur08g01210 Tetranychus urticae tetur08g01210 I 0.000
TRE_0000223201 Trichobilharzia regenti TRE_0000223201 I 0.000
TTRE_0000600201 Trichuris trichiura TTRE_0000600201 I 0.000
WBGene00240517 Onchocerca volvulus WBGene00240517 I 0.000
WUBG_05086 Wuchereria bancrofti WUBG_05086 I 0.000