Bra035311 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra035311 T268099_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KAN4
M00881_2.00 		Arabidopsis thaliana
NWNRTBCNN
NNGVAYNWN		 PBM
Franco-Zorrilla et al.(2014)
KAN4 		0.909 1.000
KAN1
M00878_2.00 		Arabidopsis thaliana
NNRTNBNN
NNVNAYNN		 PBM
Franco-Zorrilla et al.(2014)
KAN1 		0.821 0.915
KAN1
M02308_2.00 		Arabidopsis thaliana
NDNDTAHNHN
NDNDTAHNHN		 PBM
Weirauch et al.(2014)
pTH7135 		0.821 0.915
KAN2
M07018_2.00 		Arabidopsis thaliana
HHHNDWATATTCTYH
DRAGAATATWHNDDD		 Dap-seq
OMalley et al.(2016)
KAN2_col_a 		0.786 0.915
KAN2
M07019_2.00 		Arabidopsis thaliana
NWWTATTCYYH
DRRGAATAWWN		 Dap-seq
OMalley et al.(2016)
KAN2_colamp_a 		0.786 0.915
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.664 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035311.1-P Myb 114 165

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

399 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00024p00224470 Amborella trichopoda AMTR_s00024p00224470 I 0.000
AMTR_s00024p00224850 Amborella trichopoda AMTR_s00024p00224850 I 0.000
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.000
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.000
Bo2g012170 Brassica oleracea Bo2g012170 I 0.000
Bo7g090950 Brassica oleracea Bo7g090950 I 0.000
Bo9g165670 Brassica oleracea Bo9g165670 I 0.000
Bostr.0556s0467 Boechera stricta Bostr.0556s0467 I 0.000
Bostr.1460s0063 Boechera stricta Bostr.1460s0063 I 0.000
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.000
Bostr.7200s0005 Boechera stricta Bostr.7200s0005 I 0.000
Bra008740 Brassica rapa Bra008740 I 0.000
Bra023486 Brassica rapa Bra023486 I 0.000
Bra025311 Brassica rapa Bra025311 I 0.000
Bra025589 Brassica rapa Bra025589 I 0.000
Bra039065 Brassica rapa Bra039065 I 0.000
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I 0.000
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I 0.000
Cagra.4961s0006 Capsella grandiflora Cagra.4961s0006 I 0.000
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.000
Carubv10005698m.g Capsella rubella Carubv10005698m.g I 0.000
Carubv10018791m.g Capsella rubella Carubv10018791m.g I 0.000
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.000
cassava27350.m1 Manihot esculenta cassava27350.m1 I 0.000
cassava28702.m1 Manihot esculenta cassava28702.m1 I 0.000
cassava7672.valid.m1 Manihot esculenta cassava7672.valid.m1 I 0.000
Ciclev10017556m.g Citrus clementina Ciclev10017556m.g I 0.000
Ciclev10032713m.g Citrus clementina Ciclev10032713m.g I 0.000
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.000
Eucgr.B03324 Eucalyptus grandis Eucgr.B03324 N 0.000
Eucgr.C00721 Eucalyptus grandis Eucgr.C00721 I 0.000
Eucgr.C02096 Eucalyptus grandis Eucgr.C02096 I 0.000
Eucgr.C03152 Eucalyptus grandis Eucgr.C03152 N 0.000
Eucgr.C03153 Eucalyptus grandis Eucgr.C03153 N 0.000
Eucgr.I01791 Eucalyptus grandis Eucgr.I01791 I 0.000
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.000
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.000
evm.TU.supercontig_126.33 Carica papaya evm.TU.supercontig_126.33 I 0.000
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I 0.000
gene32181-v1.0-hybrid Fragaria vesca gene32181-v1.0-hybrid I 0.000
GL1 Arabidopsis thaliana AT3G27920 I 0.000
GL1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5000559 I 0.000
GLYMA10G35061 Glycine max GLYMA10G35061 I 0.000
GLYMA20G32500 Glycine max GLYMA20G32500 I 0.000
Gorai.001G020600 Gossypium raimondii Gorai.001G020600 I 0.000
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.000
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I 0.000
GSMUA_Achr8G22690_001 Musa acuminata GSMUA_Achr8G22690_001 I 0.000
LjT16O05.150.nd Lotus japonicus LjT16O05.150.nd I 0.000
MDP0000164048 Malus domestica MDP0000164048 I 0.000
MDP0000199965 Malus domestica MDP0000199965 I 0.000
MDP0000266683 Malus domestica MDP0000266683 I 0.000
MDP0000537324 Malus domestica MDP0000537324 I 0.000
MDP0000578193 Malus domestica MDP0000578193 I 0.000
MDP0000650225 Malus domestica MDP0000650225 I 0.000
MYB23 Arabidopsis thaliana AT5G40330 D 0.000
orange1.1g047269m.g Citrus sinensis orange1.1g047269m.g I 0.000
PDK_20s1716541g001 Phoenix dactylifera PDK_20s1716541g001 I 0.000
PK16315.1 Cannabis sativa PK16315.1 I 0.000
Pm006678 Prunus mume Pm006678 I 0.000
Pm013279 Prunus mume Pm013279 I 0.000
Pm027045 Prunus mume Pm027045 I 0.000
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I 0.000
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.000
POPTR_0015s08700 Populus trichocarpa POPTR_0015s08700 I 0.000
PRUPE_ppa010252mg Prunus persica PRUPE_ppa010252mg I 0.000
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.000
PRUPE_ppa014884mg Prunus persica PRUPE_ppa014884mg I 0.000
SapurV1A.1178s0040 Salix purpurea SapurV1A.1178s0040 N 0.000
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.000
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.000
Si038905m.g Setaria italica Si038905m.g I 0.000
Solyc12g049300.1 Solanum lycopersicum Solyc12g049300.1 I 0.000
TCM_000535 Theobroma cacao TCM_000535 I 0.000
TCM_010360 Theobroma cacao TCM_010360 I 0.000
TCM_012057 Theobroma cacao TCM_012057 I 0.000
TCM_016886 Theobroma cacao TCM_016886 I 0.000
TCM_037377 Theobroma cacao TCM_037377 I 0.000
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.000
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.000
Thhalv10028340m.g Eutrema salsugineum Thhalv10028340m.g I 0.000
VIT_01s0127g00730 Vitis vinifera VIT_01s0127g00730 I 0.000
VIT_04s0008g01810 Vitis vinifera VIT_04s0008g01810 I 0.000
VIT_04s0008g01820 Vitis vinifera VIT_04s0008g01820 I 0.000
VIT_09s0002g01400 Vitis vinifera VIT_09s0002g01400 I 0.000
VIT_11s0016g01310 Vitis vinifera VIT_11s0016g01310 I 0.000
VIT_11s0016g01320 Vitis vinifera VIT_11s0016g01320 I 0.000
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I 0.000
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.000
WER Arabidopsis thaliana AT5G14750 D 0.000
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.000