CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ORGLA11G0056700 *(Oryza glaberrima)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	ORGLA11G0056700	T276829_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB52 M00871_2.00	Arabidopsis thaliana	NNNAMCNDNN	NNHNGKTNNN	PBM Franco-Zorrilla et al.(2014) MYB52	0.749	0.806
MYB52 M07007_2.00	Arabidopsis thaliana	TAACGGTNHHD	HDDNACCGTTA	Dap-seq OMalley et al.(2016) MYB52_col_a	0.749	0.806
MYB56 M07130_2.00	Arabidopsis thaliana	DDHNHTAACKGWHWH	DWDWCMGTTADNDHH	Dap-seq OMalley et al.(2016) MYB56_col_a	0.747	0.785
MYB56 M07131_2.00	Arabidopsis thaliana	DNNHTAACGGWHWHD	HDWDWCCGTTADNNH	Dap-seq OMalley et al.(2016) MYB56_colamp_a	0.747	0.785
MYB105 M07031_2.00	Arabidopsis thaliana	TAACGGTWWHDDW	WHHDWWACCGTTA	Dap-seq OMalley et al.(2016) MYB105_col_a	0.745	0.796
MYB105 M07032_2.00	Arabidopsis thaliana	NNDWHDHTAACGGWWWH	DWWWCCGTTADHDWHNN	Dap-seq OMalley et al.(2016) MYB105_colamp_a	0.745	0.796
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ORGLA11G0056700.1	Myb	26	72	RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLEGRSGKSCRLRWFNQL
ORGLA11G0056700.1	Myb	78	123	KRPFTEEEEERLLAAHRHHGNKWALIARHFPGRTDNAVKNHWHVVR

Links
Other Myb/SANT family TFs
Other *Oryza glaberrima* TFs