Cla004104 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla004104 T283155_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB40
M07126_2.00 		Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB40_col_a 		0.731 0.839
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.687 0.753
PK21166.1
M01281_2.00 		Cannabis sativa
HACCWAMY
RKTWGGTD		 PBM
Lambert et al.(2019)
pTH11255 		0.663 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla004104 Myb 14 61
Cla004104 Myb 67 112

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30209.m001510 Ricinus communis 30209.m001510 N 0.000
AMTR_s00011p00262800 Amborella trichopoda AMTR_s00011p00262800 N 0.000
Aquca_052_00043 Aquilegia coerulea Aquca_052_00043 N 0.000
BGIOSGA021223 Oryza indica BGIOSGA021223 N 0.000
Bo1g117640 Brassica oleracea Bo1g117640 N 0.000
Bra037587 Brassica rapa Bra037587 N 0.000
BRADI1G42040 Brachypodium distachyon BRADI1G42040 N 0.000
chr3.CM0282.620.nc Lotus japonicus chr3.CM0282.620.nc N 0.000
chr3.CM0282.640.nc Lotus japonicus chr3.CM0282.640.nc N 0.000
Ciclev10008640m.g Citrus clementina Ciclev10008640m.g N 0.000
Cucsa.032420 Cucumis sativus Cucsa.032420 N 0.000
Eucgr.F01181 Eucalyptus grandis Eucgr.F01181 N 0.000
gene27205-v1.0-hybrid Fragaria vesca gene27205-v1.0-hybrid N 0.000
GLYMA06G35561 Glycine max GLYMA06G35561 N 0.000
GLYMA12G18490 Glycine max GLYMA12G18490 N 0.000
Gorai.002G065900 Gossypium raimondii Gorai.002G065900 N 0.000
Gorai.013G172000 Gossypium raimondii Gorai.013G172000 N 0.000
GRMZM2G126170 Zea mays GRMZM2G126170 N 0.000
GSMUA_Achr4G18450_001 Musa acuminata GSMUA_Achr4G18450_001 N 0.000
LPERR06G11990 Leersia perrieri LPERR06G11990 N 0.000
Lus10013684.g Linum usitatissimum Lus10013684.g N 0.000
Lus10017944.g Linum usitatissimum Lus10017944.g N 0.000
MDP0000268133 Malus domestica MDP0000268133 N 0.000
MDP0000315095 Malus domestica MDP0000315095 N 0.000
mgf014854m Mimulus guttatus mgf014854m N 0.000
MLOC_61712 Hordeum vulgare MLOC_61712 N 0.000
MTR_8g061040 Medicago truncatula MTR_8g061040 N 0.000
OBART06G15310 Oryza barthii OBART06G15310 N 0.000
OLONG_009303 Oryza longistaminata OLONG_009303 N 0.000
OLONG_009306 Oryza longistaminata OLONG_009306 N 0.000
OMERI06G16500 Oryza meridionalis OMERI06G16500 N 0.000
OPUNC06G13910 Oryza punctata OPUNC06G13910 N 0.000
OPUNC06G13990 Oryza punctata OPUNC06G13990 N 0.000
orange1.1g016887m.g Citrus sinensis orange1.1g016887m.g N 0.000
ORUFI06G16210 Oryza rufipogon ORUFI06G16210 N 0.000
OS06G0485100 Oryza sativa OS06G0485100 N 0.000
Pavir.Ba02980 Panicum virgatum Pavir.Ba02980 N 0.000
Pavir.Bb01334 Panicum virgatum Pavir.Bb01334 N 0.000
PK03811.1 Cannabis sativa PK03811.1 N 0.000
POPTR_0011s09970 Populus trichocarpa POPTR_0011s09970 N 0.000
PRUPE_ppa007389mg Prunus persica PRUPE_ppa007389mg N 0.000
SapurV1A.0083s0320 Salix purpurea SapurV1A.0083s0320 N 0.000
SapurV1A.0303s0100 Salix purpurea SapurV1A.0303s0100 N 0.000
Sb02g020940 Sorghum bicolor Sb02g020940 N 0.000
Si030167m.g Setaria italica Si030167m.g N 0.000
Solyc10g007130.2 Solanum lycopersicum Solyc10g007130.2 N 0.000
TCM_046875 Theobroma cacao TCM_046875 N 0.000
Traes_7DS_197A95728 Triticum aestivum Traes_7DS_197A95728 N 0.000
TRIUR3_19251 Triticum urartu TRIUR3_19251 N 0.000
VIT_19s0014g01880 Vitis vinifera VIT_19s0014g01880 N 0.000