Cla016484 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla016484 T283268_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.793 0.806
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.793 0.806
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.782 0.796
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.782 0.796
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.778 0.763
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.758 0.817
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.758 0.817
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.722 0.753
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.687 0.774
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.687 0.774
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.678 0.742
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.678 0.742
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.675 0.720
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.675 0.720
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.671 0.753
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.671 0.753
MYB43
M07127_2.00 		Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB43_col_a 		0.670 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla016484 Myb 14 61
Cla016484 Myb 67 112

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

733 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009572 Calypte anna Aan_R009572 I 0.000
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.000
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.000
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.000
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.000
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.000
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.000
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.000
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.000
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.000
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.000
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.000
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.000
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.000
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.000
ENSCSAVG00000008466 Ciona savignyi ENSCSAVG00000008466 I 0.000
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.000
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.000
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.000
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.000
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.000
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.000
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.000
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.000
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.000
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.000
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.000
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.000
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.000
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.000
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.000
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.000
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.000
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.000
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.000
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.000
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.000
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.000
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.000
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.000
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.000
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.000
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.000
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.000
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.000
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.000
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.000
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.000
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.000
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.000
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.000
NR1I2 Bos taurus ENSBTAG00000019557 I 0.000
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.000
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.000
nr1i2 Danio rerio ENSDARG00000029766 I 0.000
NR1I2 Equus caballus ENSECAG00000008728 I 0.000
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.000
NR1I2 Felis catus ENSFCAG00000006092 I 0.000
NR1I2 Homo sapiens ENSG00000144852 D 0.000
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.000
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.000
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.000
NR1I2 Oryctolagus cuniculus ENSOCUG00000006125 I 0.000
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.000
NR1I2 Ochotona princeps ENSOPRG00000010448 I 0.000
NR1I2 Procavia capensis ENSPCAG00000009674 I 0.000
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.000
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.000
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.000
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.000
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.000
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.000
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.000
VDR Anolis carolinensis ENSACAG00000013485 I 0.000
VDR Bos taurus ENSBTAG00000016414 I 0.000
VDR Canis familiaris ENSCAFG00000009103 I 0.000
VDR Callithrix jacchus ENSCJAG00000015018 I 0.000
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.000
VDR Equus caballus ENSECAG00000015822 I 0.000
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.000
VDR Felis catus ENSFCAG00000024594 I 0.000
VDR Homo sapiens ENSG00000111424 D 0.000
VDR Gorilla gorilla ENSGGOG00000016473 I 0.000
VDR Loxodonta africana ENSLAFG00000006418 I 0.000
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.000
VDR Microcebus murinus ENSMICG00000009017 I 0.000
VDR Myotis lucifugus ENSMLUG00000000912 I 0.000
VDR Macaca mulatta ENSMMUG00000006727 I 0.000
Vdr Mus musculus ENSMUSG00000022479 D 0.000
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.000
VDR Otolemur garnettii ENSOGAG00000005480 I 0.000
vdr Oryzias latipes ENSORLG00000016402 I 0.000
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.000
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.000
VDR Sus scrofa ENSSSCG00000020864 I 0.000
VDR Tupaia belangeri ENSTBEG00000005717 I 0.000
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.000
VDR Tursiops truncatus ENSTTRG00000012578 I 0.000
vdr Xenopus tropicalis XB-GENE-486505 I 0.000
vdr-a Ciona intestinalis ENSCING00000020740 I 0.000
vdr.S Xenopus laevis XB-GENE-864847 I 0.000
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.000
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.000
vdra Takifugu rubripes ENSTRUG00000011907 I 0.000
vdralpha Oryzias latipes ENSORLG00000001063 I 0.000
vdrb Danio rerio ENSDARG00000070721 I 0.000
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.000
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.000
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.000