Cucsa.395890 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.395890 T284566_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.797 0.903
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.772 0.871
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.772 0.871
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.768 0.882
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.768 0.882
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.768 0.882
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.741 0.871
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.708 0.849
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.708 0.849
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.708 0.849
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.708 0.849
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.708 0.849
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.688 0.774
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.666 0.763
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.662 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.395890.1 Myb 12 58
Cucsa.395890.1 Myb 64 109

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

308 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.000
estExt_gwp_gw1.C_550163 Physcomitrella patens estExt_gwp_gw1.C_550163 D 0.000
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.000
gw1.117.121.1 Physcomitrella patens gw1.117.121.1 I 0.000
gw1.133.82.1 Physcomitrella patens gw1.133.82.1 I 0.000
gw1.14.214.1 Physcomitrella patens gw1.14.214.1 I 0.000
gw1.15.199.1 Physcomitrella patens gw1.15.199.1 I 0.000
gw1.155.87.1 Physcomitrella patens gw1.155.87.1 I 0.000
gw1.296.16.1 Physcomitrella patens gw1.296.16.1 I 0.000
gw1.480.6.1 Physcomitrella patens gw1.480.6.1 I 0.000
gw1.55.249.1 Physcomitrella patens gw1.55.249.1 I 0.000
gw1.8.141.1 Physcomitrella patens gw1.8.141.1 D 0.000
SELMODRAFT_69412 Selaginella moellendorffii SELMODRAFT_69412 I 0.000
SELMODRAFT_69413 Selaginella moellendorffii SELMODRAFT_69413 I 0.000
SELMODRAFT_73146 Selaginella moellendorffii SELMODRAFT_73146 I 0.000
SELMODRAFT_73159 Selaginella moellendorffii SELMODRAFT_73159 I 0.000