Cagra.0342s0017 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0342s0017 T285947_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.909 1.000
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.909 1.000
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.909 1.000
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.833 0.903
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.833 0.903
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.833 0.903
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.833 0.903
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.833 0.903
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.798 0.849
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.798 0.839
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.798 0.839
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.785 0.860
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.684 0.785
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.679 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0342s0017.1.p Myb 6 52
Cagra.0342s0017.1.p Myb 58 103

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

324 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004174 Aedes aegypti AAEL004174 I 0.000
AAEL013504 Aedes aegypti AAEL013504 I 0.000
AALB004781 Anopheles albimanus AALB004781 I 0.000
AARA007626 Anopheles arabiensis AARA007626 I 0.000
AATE019626 Anopheles atroparvus AATE019626 I 0.000
ACHR005948 Anopheles christyi ACHR005948 I 0.000
ACOM024997 Anopheles coluzzii ACOM024997 I 0.000
ACUA013605 Anopheles culicifacies ACUA013605 I 0.000
ADAC005019 Anopheles darlingi ADAC005019 I 0.000
ADIR008855 Anopheles dirus ADIR008855 I 0.000
AEPI008783 Anopheles epiroticus AEPI008783 I 0.000
AFAF003219 Anopheles farauti AFAF003219 I 0.000
AFUN010103 Anopheles funestus AFUN010103 I 0.000
AGAP005895 Anopheles gambiae AGAP005895 I 0.000
AGAP005896 Anopheles gambiae AGAP005896 I 0.000
AMEC016175 Anopheles melas AMEC016175 I 0.000
AMEM015129 Anopheles merus AMEM015129 I 0.000
AMIN011562 Anopheles minimus AMIN011562 I 0.000
AQUA010990 Anopheles quadriannulatus AQUA010990 I 0.000
ASIS012852 Anopheles sinensis ASIS012852 I 0.000
ASTEI02809 Anopheles stephensi ASTEI02809 I 0.000
CPIJ004922 Culex quinquefasciatus CPIJ004922 I 0.000
CpipJ_CPIJ004922 Culex pipiens CpipJ_CPIJ004922 I 0.000
Doc1 Drosophila melanogaster FBgn0028789 I 0.000
Doc2 Drosophila melanogaster FBgn0035956 D 0.000
Doc3 Drosophila melanogaster FBgn0035954 D 0.000
GA18655 Drosophila pseudoobscura FBgn0078655 I 0.000
GA18682 Drosophila pseudoobscura FBgn0078682 I 0.000
GA18721 Drosophila pseudoobscura FBgn0078721 I 0.000
GD14148 Drosophila simulans FBgn0185836 I 0.000
GD14149 Drosophila simulans FBgn0185837 I 0.000
GE20799 Drosophila yakuba FBgn0238093 I 0.000
GE20800 Drosophila yakuba FBgn0238094 I 0.000
GE21264 Drosophila yakuba FBgn0238533 I 0.000
GF10130 Drosophila ananassae FBgn0087171 I 0.000
GF24374 Drosophila ananassae FBgn0101368 I 0.000
GF24375 Drosophila ananassae FBgn0101369 I 0.000
GG14368 Drosophila erecta FBgn0106627 I 0.000
GG14369 Drosophila erecta FBgn0106628 I 0.000
GG15041 Drosophila erecta FBgn0107295 I 0.000
GH14955 Drosophila grimshawi FBgn0122430 I 0.000
GH16540 Drosophila grimshawi FBgn0124011 I 0.000
GH16541 Drosophila grimshawi FBgn0124012 I 0.000
GI11482 Drosophila mojavensis FBgn0134242 I 0.000
GI13829 Drosophila mojavensis FBgn0136583 I 0.000
GI13831 Drosophila mojavensis FBgn0136585 I 0.000
GJ11697 Drosophila virilis FBgn0198951 I 0.000
GK12279 Drosophila willistoni FBgn0214289 I 0.000
GK12352 Drosophila willistoni FBgn0214362 I 0.000
GK12353 Drosophila willistoni FBgn0214363 I 0.000
GL15033 Drosophila persimilis FBgn0152637 I 0.000
GL15034 Drosophila persimilis FBgn0152638 I 0.000
GL15081 Drosophila persimilis FBgn0152685 I 0.000
GM24895 Drosophila sechellia FBgn0179757 I 0.000
GM25112 Drosophila sechellia FBgn0179973 I 0.000
GM25113 Drosophila sechellia FBgn0179974 I 0.000
HMEL012563 Heliconius melpomene HMEL012563 I 0.000
LCUP005945 Lucilia cuprina LCUP005945 I 0.000
LCUP005946 Lucilia cuprina LCUP005946 I 0.000
LCUP005947 Lucilia cuprina LCUP005947 I 0.000
MDOA003812 Musca domestica MDOA003812 I 0.000
MDOA006037 Musca domestica MDOA006037 I 0.000
MDOA015287 Musca domestica MDOA015287 I 0.000
MESCA005219 Megaselia scalaris MESCA005219 I 0.000