Cagra.1232s0025 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1232s0025 T286022_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.909 1.000
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.862 0.925
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.862 0.925
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.853 0.925
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.785 0.860
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.785 0.860
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.785 0.860
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.742 0.828
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.742 0.828
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.742 0.828
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.742 0.828
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.742 0.828
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.675 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1232s0025.1.p Myb 14 60
Cagra.1232s0025.1.p Myb 66 111

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

287 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
9192_YGR249W Saccharomyces mikatae 9192_YGR249W I 0.000
9292_YGR249W Saccharomyces paradoxus 9292_YGR249W I 0.000
AACERI_AaceriAEL216C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL216C I 0.000
AGOS_AEL216C Ashbya gossypii AGOS_AEL216C I 0.000
DEHA2G20636g Debaryomyces hansenii DEHA2G20636g I 0.000
Ecym_5573 Eremothecium cymbalariae Ecym_5573 I 0.000
GNLVRS01_PISO0A02134g Millerozyma farinosa GNLVRS01_PISO0A02134g N 0.000
GNLVRS01_PISO0B02289g Millerozyma farinosa GNLVRS01_PISO0B02289g N 0.000
KAFR_0B04410 Kazachstania africana KAFR_0B04410 I 0.000
KLTH0H00814g Lachancea thermotolerans KLTH0H00814g I 0.000
KLTH0H00814g Kluyveromyces thermotolerans KLTH0H00814g I 0.000
KNAG_0K00470 Kazachstania naganishii KNAG_0K00470 N 0.000
Kpol_1050p79 Vanderwaltozyma polyspora Kpol_1050p79 N 0.000
Kpol_1062p8 Vanderwaltozyma polyspora Kpol_1062p8 I 0.000
MGA1 Saccharomyces cerevisiae YGR249W D 0.000
NCAS_0E03870 Naumovozyma castellii NCAS_0E03870 I 0.000
NDAI_0B00940 Naumovozyma dairenensis NDAI_0B00940 I 0.000
SAKL0H02354g Lachancea kluyveri SAKL0H02354g I 0.000
Scas_Contig645.15 Saccharomyces castellii Scas_Contig645.15 I 0.000
SKUD_199909 Saccharomyces kudriavzevii SKUD_199909 I 0.000
TPHA_0A05250 Tetrapisispora phaffii TPHA_0A05250 I 0.000
TPHA_0H01130 Tetrapisispora phaffii TPHA_0H01130 I 0.000
ZBAI_07702 Zygosaccharomyces bailii ZBAI_07702 I 0.000