Ciclev10012285m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10012285m.g T286553_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.831 0.894
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.809 0.894
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.770 0.840
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.770 0.840
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.684 0.819
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.684 0.819
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10012285m Myb 134 181

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000409401 Angiostrongylus cantonensis ACAC_0000409401 I 0.000
ALUE_0001619401 Ascaris lumbricoides ALUE_0001619401 N 0.000
ANCCEY_05105 Ancylostoma ceylanicum ANCCEY_05105 I 0.000
ASIM_0001301101 Anisakis simplex ASIM_0001301101 I 0.000
ASU_01199 Ascaris suum ASU_01199 I 0.000
BXY_0008800 Bursaphelenchus xylophilus BXY_0008800 I 0.000
CBG06052 Caenorhabditis briggsae CBG06052 I 0.000
CBN18797 Caenorhabditis brenneri CBN18797 I 0.000
CBN26258 Caenorhabditis brenneri CBN26258 I 0.000
CRE12779 Caenorhabditis remanei CRE12779 I 0.000
HCOI00435200 Haemonchus contortus HCOI00435200 I 0.000
L596_g20569 Steinernema carpocapsae L596_g20569 I 0.000
L596_g3812 Steinernema carpocapsae L596_g3812 I 0.000
L889_g5777 Steinernema feltiae L889_g5777 I 0.000
L889_g6303 Steinernema feltiae L889_g6303 I 0.000
L892_g21738 Steinernema scapterisci L892_g21738 I 0.000
L893_g27196 Steinernema glaseri L893_g27196 I 0.000
L893_g29388 Steinernema glaseri L893_g29388 I 0.000
L898_g23965 Steinernema monticolum L898_g23965 I 0.000
L898_g24498 Steinernema monticolum L898_g24498 I 0.000
nhr-7 Caenorhabditis elegans WBGene00003606 D 0.000
PEQ_0000633601 Parascaris equorum PEQ_0000633601 I 0.000
PTRK_0000497300 Parastrongyloides trichosuri PTRK_0000497300 I 0.000
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I 0.000
scaffold601-EXSNAP2012.18 Pristionchus exspectatus scaffold601-EXSNAP2012.18 N 0.000
SMUV_0000859101 Syphacia muris SMUV_0000859101 I 0.000
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I 0.000
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I 0.000
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I 0.000
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I 0.000
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I 0.000
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I 0.000
TCNE_0001063401 Toxocara canis TCNE_0001063401 N 0.000