gene24027-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene24027-v1.0-hybrid T287367_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.839 0.935
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.825 0.914
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.823 0.935
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.823 0.935
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.752 0.817
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.752 0.817
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.752 0.817
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.727 0.796
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.727 0.796
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.727 0.796
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.727 0.796
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.727 0.796
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.680 0.763
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.677 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna24027.1-v1.0-hybrid Myb 15 61
mrna24027.1-v1.0-hybrid Myb 67 112

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

316 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004106 Aedes aegypti AAEL004106 N 0.000
AALB009976 Anopheles albimanus AALB009976 N 0.000
AARA003424 Anopheles arabiensis AARA003424 N 0.000
AATE016142 Anopheles atroparvus AATE016142 N 0.000
ACHR001818 Anopheles christyi ACHR001818 N 0.000
ACUA024420 Anopheles culicifacies ACUA024420 N 0.000
ADIR000506 Anopheles dirus ADIR000506 N 0.000
AEPI002546 Anopheles epiroticus AEPI002546 N 0.000
AFAF000112 Anopheles farauti AFAF000112 N 0.000
AFUN006853 Anopheles funestus AFUN006853 N 0.000
AGAP012346 Anopheles gambiae AGAP012346 N 0.000
AMAM018365 Anopheles maculatus AMAM018365 N 0.000
AMEC009199 Anopheles melas AMEC009199 N 0.000
AMEM014753 Anopheles merus AMEM014753 N 0.000
AMIN009352 Anopheles minimus AMIN009352 N 0.000
AQUA003001 Anopheles quadriannulatus AQUA003001 N 0.000
ASIS014811 Anopheles sinensis ASIS014811 N 0.000
ASTEI02364 Anopheles stephensi ASTEI02364 N 0.000