Thhalv10016974m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10016974m.g T290075_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASR3
M07053_2.00 		Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH		 Dap-seq
OMalley et al.(2016)
AT2G33550_col_a 		0.870 0.978
ASR3
M07054_2.00 		Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN		 Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a 		0.870 0.978
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10016974m Myb 46 113

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28603.m000172 Ricinus communis 28603.m000172 N
29767.m000199 Ricinus communis 29767.m000199 N
30167.m000852 Ricinus communis 30167.m000852 N
AMTR_s00044p00233260 Amborella trichopoda AMTR_s00044p00233260 N
Aquca_027_00369 Aquilegia coerulea Aquca_027_00369 N
AS1 Arabidopsis thaliana AT2G37630 N
BGIOSGA035973 Oryza indica BGIOSGA035973 N
BGIOSGA037216 Oryza indica BGIOSGA037216 N
Bo3g031880 Brassica oleracea Bo3g031880 N
Bo4g030340 Brassica oleracea Bo4g030340 N
Bostr.23794s0314 Boechera stricta Bostr.23794s0314 N
Bra000011 Brassica rapa Bra000011 N
Bra005177 Brassica rapa Bra005177 N
BRADI4G03970 Brachypodium distachyon BRADI4G03970 N
Cagra.18121s0004 Capsella grandiflora Cagra.18121s0004 N
Carubv10023471m.g Capsella rubella Carubv10023471m.g N
cassava35798.valid.m1 Manihot esculenta cassava35798.valid.m1 N
Ca_21130 Cicer arietinum Ca_21130 N
chr3.LjT11G09.150.nc Lotus japonicus chr3.LjT11G09.150.nc N
chr3.LjT11G09.160.nc Lotus japonicus chr3.LjT11G09.160.nc N
Ciclev10011915m.g Citrus clementina Ciclev10011915m.g N
Ciclev10012089m.g Citrus clementina Ciclev10012089m.g N
Cla007228 Citrullus lanatus Cla007228 N
Cucsa.031620 Cucumis sativus Cucsa.031620 N
Eucgr.K03130 Eucalyptus grandis Eucgr.K03130 N
evm.TU.supercontig_333.1 Carica papaya evm.TU.supercontig_333.1 N
fgenesh1_pm.C_scaffold_4001520 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001520 N
gene08535-v1.0-hybrid Fragaria vesca gene08535-v1.0-hybrid N
gene10329-v1.0-hybrid Fragaria vesca gene10329-v1.0-hybrid N
gene18421-v1.0-hybrid Fragaria vesca gene18421-v1.0-hybrid N
GLYMA03G19030 Glycine max GLYMA03G19030 N
GLYMA07G15850 Glycine max GLYMA07G15850 N
GLYMA18G26600 Glycine max GLYMA18G26600 N
GLYMA18G39771 Glycine max GLYMA18G39771 N
Gorai.012G104100 Gossypium raimondii Gorai.012G104100 N
GRMZM2G403620 Zea mays GRMZM2G403620 N
GSMUA_Achr5G29070_001 Musa acuminata GSMUA_Achr5G29070_001 N
GSMUA_Achr7G10550_001 Musa acuminata GSMUA_Achr7G10550_001 N
GSMUA_Achr9G03320_001 Musa acuminata GSMUA_Achr9G03320_001 N
LPERR12G13690 Leersia perrieri LPERR12G13690 N
Lus10024392.g Linum usitatissimum Lus10024392.g N
Lus10025355.g Linum usitatissimum Lus10025355.g N
MDP0000252887 Malus domestica MDP0000252887 N
MDP0000282792 Malus domestica MDP0000282792 N
MDP0000708334 Malus domestica MDP0000708334 N
mgf026281m Mimulus guttatus mgf026281m N
mgf026496m Mimulus guttatus mgf026496m N
MTR_7g061550 Medicago truncatula MTR_7g061550 N
OB12G23330 Oryza brachyantha OB12G23330 N
OBART12G16450 Oryza barthii OBART12G16450 N
OGLUM12G18010 Oryza glumaepatula OGLUM12G18010 N
OMERI08G15890 Oryza meridionalis OMERI08G15890 N
ONIVA02G22170 Oryza nivara ONIVA02G22170 N
OPUNC12G14950 Oryza punctata OPUNC12G14950 N
orange1.1g018768m.g Citrus sinensis orange1.1g018768m.g N
ORGLA12G0144700 Oryza glaberrima ORGLA12G0144700 N
ORUFI12G18280 Oryza rufipogon ORUFI12G18280 N
OS12G0572000 Oryza sativa OS12G0572000 N
Pavir.Cb00486 Panicum virgatum Pavir.Cb00486 N
PGSC0003DMG400008834 Solanum tuberosum PGSC0003DMG400008834 N
PK14097.1 Cannabis sativa PK14097.1 N
Pm002699 Prunus mume Pm002699 N
POPTR_0004s10250 Populus trichocarpa POPTR_0004s10250 N
POPTR_0006s08610 Populus trichocarpa POPTR_0006s08610 N
POPTR_0017s13950 Populus trichocarpa POPTR_0017s13950 N
PRUPE_ppa007753mg Prunus persica PRUPE_ppa007753mg N
SapurV1A.0001s1780 Salix purpurea SapurV1A.0001s1780 N
SapurV1A.0101s0440 Salix purpurea SapurV1A.0101s0440 N
Sb08g018840 Sorghum bicolor Sb08g018840 N
scaffold_402408.1 Arabidopsis lyrata scaffold_402408.1 N
Solyc09g010840.1 Solanum lycopersicum Solyc09g010840.1 N
TCM_019507 Theobroma cacao TCM_019507 N
TCM_021932 Theobroma cacao TCM_021932 N
Thhalv10016830m.g Eutrema salsugineum Thhalv10016830m.g N
Traes_5BS_E635B0A281 Triticum aestivum Traes_5BS_E635B0A281 N
Traes_5DS_8F3BD4450 Triticum aestivum Traes_5DS_8F3BD4450 N
TRIUR3_13997 Triticum urartu TRIUR3_13997 N
VIT_08s0007g00410 Vitis vinifera VIT_08s0007g00410 N
VIT_14s0083g00120 Vitis vinifera VIT_14s0083g00120 N