Carubv10008817m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10008817m.g T297483_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC13
M07170_2.00 		Arabidopsis thaliana
TDNCTTGYYNNNCAAG
CTTGNNNRRCAAGNHA		 Dap-seq
OMalley et al.(2016)
ANAC013_col_a 		0.966 0.974
ANAC13
M07171_2.00 		Arabidopsis thaliana
CTTGYBHNNCAAGNHAH
DTDNCTTGNNDVRCAAG		 Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a 		0.966 0.974
ANAC13
M11077_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC013_Q2 		0.966 0.974
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008817m NAC/NAM 12 136

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003158 Ricinus communis 29983.m003158 I 0.000
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.000
Bo4g042390 Brassica oleracea Bo4g042390 I 0.000
Bra005470 Brassica rapa Bra005470 I 0.000
Bra021880 Brassica rapa Bra021880 I 0.000
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.000
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.000
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.000
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.000
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.000
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.000
Cla009788 Citrullus lanatus Cla009788 I 0.000
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.000
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.000
GLYMA07G31880 Glycine max GLYMA07G31880 N 0.000
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.000
GLYMA13G37130 Glycine max GLYMA13G37130 N 0.000
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.000
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.000
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.000
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.000
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.000
MDP0000156994 Malus domestica MDP0000156994 I 0.000
MDP0000861601 Malus domestica MDP0000861601 I 0.000
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.000
OB04G27960 Oryza brachyantha OB04G27960 I 0.000
OBART04G20940 Oryza barthii OBART04G20940 I 0.000
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.000
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.000
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.000
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.000
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.000
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.000
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.000
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.000
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.000
PK26639.1 Cannabis sativa PK26639.1 I 0.000
Pm010075 Prunus mume Pm010075 I 0.000
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.000
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.000
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.000
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.000
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.000
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.000
SPL7 Oryza sativa OS04G0551500 I 0.000
TCM_029832 Theobroma cacao TCM_029832 I 0.000