Carubv10014118m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10014118m.g T297510_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
anac046
M00884_2.00 		Arabidopsis thaliana
NHMCGCMABNN
NNVTKGCGKDN		 PBM
Franco-Zorrilla et al.(2014)
ANAC46 		0.970 0.991
anac046
M07196_2.00 		Arabidopsis thaliana
CKTSHNNHWCAMGYHAH
DTDRCKTGWDNNDSAMG		 Dap-seq
OMalley et al.(2016)
ANAC046_colamp_a 		0.970 0.991
anac046
M07197_2.00 		Arabidopsis thaliana
NNTWNCKTGTNNNDCAMGYHA
TDRCKTGHNNNACAMGNWANN		 Dap-seq
OMalley et al.(2016)
ANAC046_col 		0.970 0.991
ANAC087
M07232_2.00 		Arabidopsis thaliana
TDNCKTSHNNNDYACGYHANB
VNTDRCGTRHNNNDSAMGNHA		 Dap-seq
OMalley et al.(2016)
ANAC087_colamp_a 		0.938 0.912
ANAC087
M07233_2.00 		Arabidopsis thaliana
TWNCKTGWNNNDCAMGYHA
TDRCKTGHNNNWCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC087_col_v3a 		0.938 0.912
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014118m NAC/NAM 22 147

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29950.m001171 Ricinus communis 29950.m001171 I 0.936
anac046 Arabidopsis thaliana AT3G04060 D 0.970
anac046 Arabidopsis lyrata fgenesh2_kg.3__366__AT3G04060.1 I 0.968
ANAC087 Arabidopsis thaliana AT5G18270 D 0.938
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I 0.938
Aquca_014_00944 Aquilegia coerulea Aquca_014_00944 I 0.884
Bo1g152230 Brassica oleracea Bo1g152230 I 0.950
Bo2g015440 Brassica oleracea Bo2g015440 I 0.934
Bo3g013050 Brassica oleracea Bo3g013050 I 0.934
Bo5g148430 Brassica oleracea Bo5g148430 I 0.964
Bo9g157320 Brassica oleracea Bo9g157320 I 0.872
Bo9g175670 Brassica oleracea Bo9g175670 I 0.874
Bostr.2570s0302 Boechera stricta Bostr.2570s0302 I 0.968
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I 0.936
Bostr.26833s0095 Boechera stricta Bostr.26833s0095 I 0.873
Bra002148 Brassica rapa Bra002148 I 0.872
Bra006449 Brassica rapa Bra006449 I 0.934
Bra023669 Brassica rapa Bra023669 I 0.934
Bra031950 Brassica rapa Bra031950 I 0.965
Bra036223 Brassica rapa Bra036223 I 0.882
Bra040153 Brassica rapa Bra040153 I 0.946
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I 0.937
Cagra.2026s0002 Capsella grandiflora Cagra.2026s0002 I 0.972
Carubv10001373m.g Capsella rubella Carubv10001373m.g I 0.937
cassava25877.m1 Manihot esculenta cassava25877.m1 I 0.933
cassava35698.valid.m1 Manihot esculenta cassava35698.valid.m1 I 0.939
Ca_08255 Cicer arietinum Ca_08255 I 0.889
Ca_19144 Cicer arietinum Ca_19144 I 0.892
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I 0.889
Ciclev10020549m.g Citrus clementina Ciclev10020549m.g I 0.899
Cla012339 Citrullus lanatus Cla012339 I 0.891
Cucsa.002980 Cucumis sativus Cucsa.002980 I 0.896
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I 0.921
gene20686-v1.0-hybrid Fragaria vesca gene20686-v1.0-hybrid I 0.894
GLYMA02G07760 Glycine max GLYMA02G07760 I 0.906
GLYMA16G04720 Glycine max GLYMA16G04720 I 0.888
GLYMA16G26810 Glycine max GLYMA16G26810 I 0.906
GLYMA19G28515 Glycine max GLYMA19G28515 I 0.888
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I 0.937
Gorai.013G118000 Gossypium raimondii Gorai.013G118000 I 0.936
GSMUA_Achr5G07600_001 Musa acuminata GSMUA_Achr5G07600_001 I 0.895
GSMUA_Achr6G08600_001 Musa acuminata GSMUA_Achr6G08600_001 I 0.877
Lus10003435.g Linum usitatissimum Lus10003435.g I 0.926
Lus10026879.g Linum usitatissimum Lus10026879.g I 0.931
MDP0000184069 Malus domestica MDP0000184069 I 0.905
MTR_6g032770 Medicago truncatula MTR_6g032770 I 0.875
orange1.1g016542m.g Citrus sinensis orange1.1g016542m.g I 0.899
Pm025307 Prunus mume Pm025307 I 0.895
POPTR_0013s05110 Populus trichocarpa POPTR_0013s05110 I 0.927
POPTR_0019s04710 Populus trichocarpa POPTR_0019s04710 I 0.913
PRUPE_ppa005770mg Prunus persica PRUPE_ppa005770mg I 0.896
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I 0.901
SapurV1A.0867s0130 Salix purpurea SapurV1A.0867s0130 I 0.921
SapurV1A.1196s0010 Salix purpurea SapurV1A.1196s0010 I 0.921
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I 0.901
TCM_026028 Theobroma cacao TCM_026028 I 0.937
Thhalv10014060m.g Eutrema salsugineum Thhalv10014060m.g I 0.935
Thhalv10021125m.g Eutrema salsugineum Thhalv10021125m.g I 0.966
VIT_08s0007g07640 Vitis vinifera VIT_08s0007g07640 I 0.928
VIT_17s0000g06400 Vitis vinifera VIT_17s0000g06400 I 0.882