Pavir.Fb02407 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Fb02407 T298856_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.902 0.763
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.902 0.763
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb02407.1.p NAC/NAM 20 146

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m006159 Ricinus communis 29908.m006159 N
Aquca_014_00175 Aquilegia coerulea Aquca_014_00175 N
cassava32027.m1 Manihot esculenta cassava32027.m1 N
cassava44367.m1 Manihot esculenta cassava44367.m1 N
Ca_23494 Cicer arietinum Ca_23494 N
Ca_26279 Cicer arietinum Ca_26279 N
Ciclev10000940m.g Citrus clementina Ciclev10000940m.g N
Cla014166 Citrullus lanatus Cla014166 N
Cucsa.365230 Cucumis sativus Cucsa.365230 N
Eucgr.F03769 Eucalyptus grandis Eucgr.F03769 N
Eucgr.L03490 Eucalyptus grandis Eucgr.L03490 N
evm.TU.supercontig_36.32 Carica papaya evm.TU.supercontig_36.32 N
gene11137-v1.0-hybrid Fragaria vesca gene11137-v1.0-hybrid N
GLYMA04G43090 Glycine max GLYMA04G43090 N
GLYMA06G11610 Glycine max GLYMA06G11610 N
GLYMA13G02840 Glycine max GLYMA13G02840 N
Gorai.009G244200 Gossypium raimondii Gorai.009G244200 N
Gorai.010G048800 Gossypium raimondii Gorai.010G048800 N
LjT15C06.70.nc Lotus japonicus LjT15C06.70.nc N
LjT26J05.10.nc Lotus japonicus LjT26J05.10.nc N
Lus10008316.g Linum usitatissimum Lus10008316.g N
Lus10028056.g Linum usitatissimum Lus10028056.g N
MDP0000319342 Malus domestica MDP0000319342 N
MDP0000884524 Malus domestica MDP0000884524 N
MTR_3g072710 Medicago truncatula MTR_3g072710 N
MTR_5g058860 Medicago truncatula MTR_5g058860 N
PGSC0003DMG400012071 Solanum tuberosum PGSC0003DMG400012071 N
Pm004863 Prunus mume Pm004863 N
POPTR_0002s08660 Populus trichocarpa POPTR_0002s08660 N
POPTR_0005s15900 Populus trichocarpa POPTR_0005s15900 N
PRUPE_ppa018977mg Prunus persica PRUPE_ppa018977mg N
SapurV1A.0010s0900 Salix purpurea SapurV1A.0010s0900 N
SapurV1A.0105s0110 Salix purpurea SapurV1A.0105s0110 N
Solyc11g013150.1 Solanum lycopersicum Solyc11g013150.1 N
TCM_035069 Theobroma cacao TCM_035069 N
VIT_18s0001g03310 Vitis vinifera VIT_18s0001g03310 N