CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSGMOG00000012561 *(Gadus morhua)* Paired box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00292 (PAX)	IPR001523	ENSGMOG00000012561	T311665_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
pax2b M02425_2.00	Danio rerio	HVNYSRNSCR	YGSNYSRNBD	PBM Weirauch et al.(2014) pTH8679	0.992	0.992
pax2 M02428_2.00	Xenopus tropicalis	NNNRNBCRNN	NNYGVNYNNN	PBM Weirauch et al.(2014) pTH8556	0.984	0.984
Pax5B M01301_2.00	Gallus gallus	NSNDTNNNN	NNNNAHNSN	PBM Lambert et al.(2019) pTH9781	0.976	0.976
PAX5 M03443_2.00	Homo sapiens	RNBYANYSAWSCGTRACN	NGTYACGSWTSRNTRVNY	SELEX Jolma et al.(2013) PAX5_1	0.976	0.976
PAX5 M08160_2.00	Homo sapiens	RDGCGTGACCNN	NNGGTCACGCHY	ChIP-seq Mathelier et al.(2014) MA0014.3	0.976	0.976
PAX5 M07995_2.00	Homo sapiens	BCAVYSRDSCRKRRC	GYYMYGSHYSRBTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5C20_HudsonAlpha	0.976	0.976
PAX5 M07996_2.00	Homo sapiens	BCASYSRDSCRTRAC	GTYAYGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5N19_HudsonAlpha	0.976	0.976
PAX5 M07997_2.00	Homo sapiens	CASYSRDSCRKRACN	NGTYMYGSHYSRSTG	ChIP-seq Gerstein et al.(2012) GM12891_PAX5C20_HudsonAlpha	0.976	0.976
PAX5 M07998_2.00	Homo sapiens	BCASYSRDSCGKRRC	GYYMCGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12892_PAX5C20_HudsonAlpha	0.976	0.976
PAX5 M08227_2.00	Homo sapiens	BCANYSRDGCGTRAM	KTYACGCHYSRNTGV	ChIP-seq Contrino et al.(2012) Mv108	0.976	0.976
PAX5 M08228_2.00	Homo sapiens	AGCGTGRCYG	CRGYCACGCT	ChIP-seq Contrino et al.(2012) Mv109	0.976	0.976
PAX5 M09341_2.00	Homo sapiens	SNVDGNKCARCVRAGCRDGAC	GTCHYGCTYBGYTGMNCHBNS	Misc Kulakovskiy et al.(2013) PAX5_HUMAN.H11MO.0.A	0.976	0.976
Pax5 M09342_2.00	Mus musculus	VDRNBCAVYVRDSCRKRRM	KYYMYGSHYBRBTGVNYHB	Misc Kulakovskiy et al.(2013) PAX5_MOUSE.H11MO.0.A	0.976	0.976
PAX5 M09622_2.00	Homo sapiens	BCASYSRDSCRTGRMN	NKYCAYGSHYSRSTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_1	0.976	0.976
PAX5 M09623_2.00	Homo sapiens	BCABNVRSCGTGAC	GTCACGSYBNVTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_2	0.976	0.976
PAX5 M11208_2.00	Homo sapiens	BCNNNRNKCANBGNWGNRKRGMSRSHNB	VNDSYSKCYMYNCWNCVNTGMNYNNNGV	Transfac Matys et al.(2006) V$PAX5_01	0.976	0.976
PAX5 M11209_2.00	Homo sapiens	VRHVDGDNDBBTNRAGCGKRACVRYNVH	DBNRYBGTYMCGCTYNAVVHNHCHBDYB	Transfac Matys et al.(2006) V$PAX5_02	0.976	0.976
PAX5 M11210_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_06	0.976	0.976
PAX5 M11211_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_07	0.976	0.976
PAX5 M11212_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_Q6	0.976	0.976
PAX8 M05685_2.00	Homo sapiens	NRNBYRNYSRWGCGTGACSN	NSGTCACGCWYSRNYRVNYN	SELEX Yin et al.(2017) PAX8_FL_HT-SELEX	0.944	0.944
Pax8 M09624_2.00	Rattus norvegicus	BCAGBCADSCRKGVM	KBCMYGSHTGVCTGV	Misc Heinz et al.(2010) Thyroid-Pax8_GSE26938	0.944	0.944
PAX8 M11205_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_01	0.944	0.944
PAX8 M11206_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_B	0.944	0.944
PAX8 M05686_2.00	Homo sapiens	NRNBCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGVNYN	SELEX Yin et al.(2017) PAX8_FL_Methyl-HT-SELEX	0.944	0.944
sv M01302_2.00	Drosophila melanogaster	NNNSCRBRDM	KHYVYGSNNN	PBM Lambert et al.(2019) pTH9773	0.888	0.888
sv M03949_2.00	Drosophila melanogaster	NBCRNYSAWGCGTGACS	SGTCACGCWTSRNYGVN	SELEX Nitta et al.(2015) sv_1	0.888	0.888
sv M06438_2.00	Drosophila melanogaster	RNYSRDSCGTRACNN	NNGTYACGSHYSRNY	B1H Zhu et al.(2011) sv_SOLEXA_5_FBgn0005561	0.888	0.888
PAX1 M03442_2.00	Homo sapiens	DBCANTSAWGCGTGACS	SGTCACGCWTSANTGVH	SELEX Jolma et al.(2013) PAX1_1	0.752	0.752
PAX1 M05687_2.00	Homo sapiens	BCRNTSRWGCGTGACSN	NSGTCACGCWYSANYGV	SELEX Yin et al.(2017) PAX1_eDBD_HT-SELEX	0.752	0.752
PAX1 M11207_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX1_B	0.752	0.752
PAX1 M05688_2.00	Homo sapiens	BCRNTSAWGCGTGACSN	NSGTCACGCWTSANYGV	SELEX Yin et al.(2017) PAX1_eDBD_Methyl-HT-SELEX	0.752	0.752
egl-38 M02426_2.00	Caenorhabditis elegans	ACCGTGAYCAC	GTGRTCACGGT	PBM Weirauch et al.(2014) pTH8981	0.744	0.744
pax-2 M00706_2.00	Caenorhabditis elegans	RMSCRTRACS	SGTYAYGSKY	PBM Narasimhan et al.(2015) pTH10794	0.744	0.744
PAX9 M03444_2.00	Homo sapiens	NKCANTSAWGCGTGACS	SGTCACGCWTSANTGMN	SELEX Jolma et al.(2013) PAX9_1	0.744	0.744
PAX9 M05689_2.00	Homo sapiens	BHRNYSRDSCGTRACSN	NSGTYACGSHYSRNYDV	SELEX Yin et al.(2017) PAX9_eDBD_HT-SELEX	0.744	0.744
PAX9 M05690_2.00	Homo sapiens	BCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGV	SELEX Yin et al.(2017) PAX9_eDBD_Methyl-HT-SELEX	0.744	0.744
PAX7 M00346_2.00	Homo sapiens	NGTYAYGSHN	NDSCRTRACN	PBM Barrera et al.(2016) PAX7_REF	0.736	0.736
Poxm M03944_2.00	Drosophila melanogaster	CAVTCAWGCGTGACR	YGTCACGCWTGABTG	SELEX Nitta et al.(2015) Poxm_1	0.736	0.736
Poxm M03945_2.00	Drosophila melanogaster	NYSAWGCRTRACS	SGTYAYGCWTSRN	SELEX Nitta et al.(2015) Poxm_2	0.736	0.736
Poxn M03946_2.00	Drosophila melanogaster	DGCGTGACSGTCACGSY	RSCGTGACSGTCACGCH	SELEX Nitta et al.(2015) Poxn_1	0.736	0.736
Poxn M03947_2.00	Drosophila melanogaster	RSCGKGACSGTTMCGSW	WSCGKAACSGTCMCGSY	SELEX Nitta et al.(2015) Poxn_2	0.736	0.736
Poxn M03948_2.00	Drosophila melanogaster	NCGTTCCGGAACGD	HCGTTCCGGAACGN	SELEX Nitta et al.(2015) Poxn_3	0.736	0.736
Poxm M06436_2.00	Drosophila melanogaster	NNNNNNMVNHNRNSCRTGA	TCAYGSNYNDNBKNNNNNN	B1H Zhu et al.(2011) Poxm_SOLEXA_5_FBgn0003129	0.736	0.736
Poxn M06437_2.00	Drosophila melanogaster	RSCGTGACG	CGTCACGSY	B1H Zhu et al.(2011) Poxn_SOLEXA_5_FBgn0003130	0.736	0.736
pax9 M11204_2.00	Danio rerio	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX9_B	0.736	0.736
PAX7 M00345_2.00	Homo sapiens	NSGTCACGSN	NSCGTGACSN	PBM Barrera et al.(2016) PAX7_P112L	0.728	0.728
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSGMOP00000013440	Paired box	4	128	GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR

Links
Other Paired box family TFs
Other *Gadus morhua* TFs

556 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Alligator_sinensis_CCG003455.1	Alligator sinensis	Alligator_sinensis_CCG003455.1	I
Cmyd_10007335	Chelonia mydas	Cmyd_10007335	I
ENSAMEG00000006419	Ailuropoda melanoleuca	ENSAMEG00000006419	I
ENSAMXG00000001207	Astyanax mexicanus	ENSAMXG00000001207	I
ENSBTAP00000051139-D1	Bos grunniens	ENSBTAP00000051139-D1	I
ENSCSAG00000006712	Chlorocebus sabaeus	ENSCSAG00000006712	I
ENSDNOG00000006546	Dasypus novemcinctus	ENSDNOG00000006546	I
ENSLOCG00000001327	Lepisosteus oculatus	ENSLOCG00000001327	I
ENSMEUG00000015659	Macropus eugenii	ENSMEUG00000015659	I
ENSMMUG00000014369	Macaca mulatta	ENSMMUG00000014369	I
ENSMODG00000007952	Monodelphis domestica	ENSMODG00000007952	I
ENSMPUG00000013694	Mustela putorius furo	ENSMPUG00000013694	I
ENSNLEG00000004096	Nomascus leucogenys	ENSNLEG00000004096	I
ENSOANG00000001309	Ornithorhynchus anatinus	ENSOANG00000001309	I
ENSOARG00000016929	Ovis aries	ENSOARG00000016929	I
ENSONIG00000005336	Oreochromis niloticus	ENSONIG00000005336	I
ENSP00000378286	Macaca fascicularis	ENSP00000378286	I
ENSPANG00000008469	Papio anubis	ENSPANG00000008469	I
ENSPFOG00000009453	Poecilia formosa	ENSPFOG00000009453	I
ENSPPYG00000003148	Pongo abelii	ENSPPYG00000003148	I
ENSPSIG00000001786	Pelodiscus sinensis	ENSPSIG00000001786	I
ENSSSCG00000025351	Sus scrofa	ENSSSCG00000025351	I
ENSSTOG00000027839	Ictidomys tridecemlineatus	ENSSTOG00000027839	I
ENSXMAG00000003145	Xiphophorus maculatus	ENSXMAG00000003145	I
Ogr03307	Ophisaurus gracilis	Ogr03307	I
Pvit_09391	Pogona vitticeps	Pvit_09391	I
zbtb3	Tetraodon nigroviridis	ENSTNIG00000003382	I
ZBTB3	Pteropus vampyrus	ENSPVAG00000003477	I
Zbtb3	Rattus norvegicus	ENSRNOG00000019461	I
zbtb3	Xenopus tropicalis	XB-GENE-991962	I
zbtb3	Takifugu rubripes	ENSTRUG00000013773	I
ZBTB3	Tursiops truncatus	ENSTTRG00000002477	I
ZBTB3	Choloepus hoffmanni	ENSCHOG00000012845	I
ZBTB3	Canis familiaris	ENSCAFG00000015650	I
ZBTB3	Bos taurus	ENSBTAG00000021329	I
zbtb3	Gasterosteus aculeatus	ENSGACG00000016930	I
ZBTB3	Pan troglodytes	ENSPTRG00000003785	I
zbtb3	Oryzias latipes	ENSORLG00000002503	N
ZBTB3	Otolemur garnettii	ENSOGAG00000011414	I
ZBTB3	Oryctolagus cuniculus	ENSOCUG00000008921	I
ZBTB3	Callithrix jacchus	ENSCJAG00000018693	I
ZBTB3	Cavia porcellus	ENSCPOG00000011665	I
Zbtb3	Mus musculus	ENSMUSG00000071661	D
zbtb3	Danio rerio	ENSDARG00000036235	I
ZBTB3	Dasypus novemcinctus	ENSDNOG00000043011	I
Zbtb3	Dipodomys ordii	ENSDORG00000015697	I
ZBTB3	Myotis lucifugus	ENSMLUG00000011020	I
ZBTB3	Microcebus murinus	ENSMICG00000009961	I
ZBTB3	Felis catus	ENSFCAG00000027690	I
ZBTB3	Homo sapiens	ENSG00000185670	I
ZBTB3	Gorilla gorilla	ENSGGOG00000011735	I

ENSGMOG00000012561 (Gadus morhua) Paired box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

556 Related TFs

ENSGMOG00000012561 **(Gadus morhua)
Paired box**