PAX8 (Ochotona princeps)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSOPRG00000012910 T311743_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		1.000 1.000
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		1.000 1.000
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		1.000 1.000
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		1.000 1.000
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		1.000 1.000
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.934 0.934
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.934 0.934
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.934 0.934
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.934 0.934
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.934 0.934
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.934 0.934
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.934 0.934
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.934 0.934
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.934 0.934
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.934 0.934
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.934 0.934
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.934 0.934
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.934 0.934
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.934 0.934
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.934 0.934
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.934 0.934
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.934 0.934
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.934 0.934
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.934 0.934
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.926 0.926
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.835 0.835
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.835 0.835
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.835 0.835
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.727 0.727
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.727 0.727
Poxn
M03946_2.00 		Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH		 SELEX
Nitta et al.(2015)
Poxn_1 		0.727 0.727
Poxn
M03947_2.00 		Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY		 SELEX
Nitta et al.(2015)
Poxn_2 		0.727 0.727
Poxn
M03948_2.00 		Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN		 SELEX
Nitta et al.(2015)
Poxn_3 		0.727 0.727
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.727 0.727
Poxn
M06437_2.00 		Drosophila melanogaster
RSCGTGACG
CGTCACGSY		 B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130 		0.727 0.727
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.727 0.727
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.727 0.727
egl-38
M02426_2.00 		Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT		 PBM
Weirauch et al.(2014)
pTH8981 		0.719 0.719
pax-2
M00706_2.00 		Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY		 PBM
Narasimhan et al.(2015)
pTH10794 		0.719 0.719
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.719 0.719
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.719 0.719
PAX7
M00345_2.00 		Homo sapiens
NSGTCACGSN
NSCGTGACSN		 PBM
Barrera et al.(2016)
PAX7_P112L 		0.719 0.719
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.719 0.719
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.711 0.711
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.711 0.711
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.711 0.711
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000011784 Paired box 8 131

Links

Other Paired box family TFs
Other Ochotona princeps TFs

460 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m009035 Ricinus communis 30128.m009035 I
30147.m014441 Ricinus communis 30147.m014441 N
ANAC041 Arabidopsis lyrata fgenesh2_kg.4__1354__AT2G33480.1 I
ANAC083 Vitis vinifera VIT_01s0146g00280 I
ANAC083 Arabidopsis lyrata scaffold_601328.1 I
Aquca_011_00050 Aquilegia coerulea Aquca_011_00050 I
Aquca_021_00051 Aquilegia coerulea Aquca_021_00051 I
Bo4g043670 Brassica oleracea Bo4g043670 I
Bostr.23794s0753 Boechera stricta Bostr.23794s0753 I
Bostr.2902s0053 Boechera stricta Bostr.2902s0053 I
Bra005492 Brassica rapa Bra005492 I
Cagra.0301s0034 Capsella grandiflora Cagra.0301s0034 N
Cagra.0596s0010 Capsella grandiflora Cagra.0596s0010 I
Carubv10002548m.g Capsella rubella Carubv10002548m.g I
Carubv10023833m.g Capsella rubella Carubv10023833m.g N
cassava1138.valid.m1 Manihot esculenta cassava1138.valid.m1 I
cassava12891.valid.m1 Manihot esculenta cassava12891.valid.m1 I
cassava37235.valid.m1 Manihot esculenta cassava37235.valid.m1 N
chr1.CM0017.80.nc Lotus japonicus chr1.CM0017.80.nc I
Ciclev10032547m.g Citrus clementina Ciclev10032547m.g I
Cla001517 Citrullus lanatus Cla001517 I
Cucsa.349370 Cucumis sativus Cucsa.349370 I
Eucgr.B03537 Eucalyptus grandis Eucgr.B03537 I
Eucgr.H03387 Eucalyptus grandis Eucgr.H03387 I
evm.TU.supercontig_4.138 Carica papaya evm.TU.supercontig_4.138 N
evm.TU.supercontig_99.63 Carica papaya evm.TU.supercontig_99.63 I
gene06460-v1.0-hybrid Fragaria vesca gene06460-v1.0-hybrid N
GLYMA08G47520 Glycine max GLYMA08G47520 I
GLYMA18G53954 Glycine max GLYMA18G53954 I
Gorai.005G195300 Gossypium raimondii Gorai.005G195300 I
Gorai.012G125500 Gossypium raimondii Gorai.012G125500 I
Lus10001809.g Linum usitatissimum Lus10001809.g I
MDP0000126517 Malus domestica MDP0000126517 I
MDP0000130123 Malus domestica MDP0000130123 I
MTR_3g098810 Medicago truncatula MTR_3g098810 N
MTR_7g005280 Medicago truncatula MTR_7g005280 I
NAC041 Arabidopsis thaliana AT2G33480 I
NAC083 Arabidopsis thaliana AT5G13180 D
orange1.1g030727m.g Citrus sinensis orange1.1g030727m.g I
PGSC0003DMG400011891 Solanum tuberosum PGSC0003DMG400011891 N
PK12461.1 Cannabis sativa PK12461.1 I
Pm007070 Prunus mume Pm007070 I
POPTR_0001s13380 Populus trichocarpa POPTR_0001s13380 I
POPTR_0003s16490 Populus trichocarpa POPTR_0003s16490 I
POPTR_0012s10530 Populus trichocarpa POPTR_0012s10530 N
POPTR_0015s11420 Populus trichocarpa POPTR_0015s11420 N
PRUPE_ppa010222mg Prunus persica PRUPE_ppa010222mg I
SapurV1A.0173s0020 Salix purpurea SapurV1A.0173s0020 I
SapurV1A.0453s0210 Salix purpurea SapurV1A.0453s0210 I
SapurV1A.1562s0030 Salix purpurea SapurV1A.1562s0030 N
SapurV1A.1562s0040 Salix purpurea SapurV1A.1562s0040 N
Solyc01g009860.2 Solanum lycopersicum Solyc01g009860.2 N
TCM_008477 Theobroma cacao TCM_008477 I
TCM_014713 Theobroma cacao TCM_014713 I
Thhalv10017152m.g Eutrema salsugineum Thhalv10017152m.g I