nLs.2.1.2.g05197 (Litomosoides sigmodontis)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 nLs.2.1.2.g05197 T312835_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.864 0.864
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.864 0.864
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.864 0.864
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.864 0.864
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.864 0.864
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.864 0.864
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.864 0.864
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.864 0.864
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.864 0.864
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.864 0.864
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.864 0.864
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.864 0.864
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.864 0.864
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.864 0.864
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.864 0.864
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.864 0.864
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.864 0.864
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.864 0.864
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.848 0.848
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.848 0.848
pax-2
M00706_2.00 		Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY		 PBM
Narasimhan et al.(2015)
pTH10794 		0.824 0.824
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.824 0.824
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.824 0.824
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.824 0.824
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.824 0.824
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.824 0.824
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.816 0.816
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.816 0.816
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.816 0.816
egl-38
M02426_2.00 		Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT		 PBM
Weirauch et al.(2014)
pTH8981 		0.808 0.808
Poxn
M03946_2.00 		Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH		 SELEX
Nitta et al.(2015)
Poxn_1 		0.736 0.736
Poxn
M03947_2.00 		Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY		 SELEX
Nitta et al.(2015)
Poxn_2 		0.736 0.736
Poxn
M03948_2.00 		Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN		 SELEX
Nitta et al.(2015)
Poxn_3 		0.736 0.736
Poxn
M06437_2.00 		Drosophila melanogaster
RSCGTGACG
CGTCACGSY		 B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130 		0.736 0.736
PAX1
M03442_2.00 		Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH		 SELEX
Jolma et al.(2013)
PAX1_1 		0.720 0.720
PAX9
M03444_2.00 		Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN		 SELEX
Jolma et al.(2013)
PAX9_1 		0.720 0.720
PAX1
M05687_2.00 		Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX 		0.720 0.720
PAX9
M05689_2.00 		Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV		 SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX 		0.720 0.720
PAX1
M11207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX1_B 		0.720 0.720
PAX1
M05688_2.00 		Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV		 SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX 		0.720 0.720
PAX9
M05690_2.00 		Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV		 SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX 		0.720 0.720
Poxm
M03944_2.00 		Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG		 SELEX
Nitta et al.(2015)
Poxm_1 		0.712 0.712
Poxm
M03945_2.00 		Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN		 SELEX
Nitta et al.(2015)
Poxm_2 		0.712 0.712
Poxm
M06436_2.00 		Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN		 B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129 		0.712 0.712
pax9
M11204_2.00 		Danio rerio Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX9_B 		0.712 0.712
PAX7
M00346_2.00 		Homo sapiens
NGTYAYGSHN
NDSCRTRACN		 PBM
Barrera et al.(2016)
PAX7_REF 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t05197-RA Paired box 75 199

Links

Other Paired box family TFs
Other Litomosoides sigmodontis TFs

581 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAH73068 Xenopus laevis AAH73068 I
Aan_R006576 Calypte anna Aan_R006576 I
Afo_R014591 Aptenodytes forsteri Afo_R014591 I
Alligator_sinensis_CCG018668.1 Alligator sinensis Alligator_sinensis_CCG018668.1 I
Brh_R005520 Buceros rhinoceros Brh_R005520 I
ENSAMEG00000003872 Ailuropoda melanoleuca ENSAMEG00000003872 I
ENSAMXG00000003833 Astyanax mexicanus ENSAMXG00000003833 I
ENSAPLG00000002385 Anas platyrhynchos ENSAPLG00000002385 I
ENSCSAG00000004520 Chlorocebus sabaeus ENSCSAG00000004520 I
ENSFALG00000000985 Ficedula albicollis ENSFALG00000000985 I
ENSGMOG00000001888 Gadus morhua ENSGMOG00000001888 I
ENSLACG00000017669 Latimeria chalumnae ENSLACG00000017669 I
ENSLOCG00000003619 Lepisosteus oculatus ENSLOCG00000003619 I
ENSLOCG00000011655 Lepisosteus oculatus ENSLOCG00000011655 I
ENSMEUG00000003014 Macropus eugenii ENSMEUG00000003014 I
ENSMPUG00000012796 Mustela putorius furo ENSMPUG00000012796 I
ENSOARG00000012477 Ovis aries ENSOARG00000012477 I
ENSONIG00000015524 Oreochromis niloticus ENSONIG00000015524 I
ENSP00000379847 Macaca fascicularis ENSP00000379847 I
ENSP00000379847-D1 Bos grunniens ENSP00000379847-D1 I
ENSPANG00000002501 Papio anubis ENSPANG00000002501 I
ENSPFOG00000008911 Poecilia formosa ENSPFOG00000008911 I
ENSPPYG00000003495 Pongo abelii ENSPPYG00000003495 I
ENSPSIG00000009683 Pelodiscus sinensis ENSPSIG00000009683 I
ENSSTOG00000009647 Ictidomys tridecemlineatus ENSSTOG00000009647 I
ENSTGUG00000008153 Taeniopygia guttata ENSTGUG00000008153 I
ENSTSYG00000004324 Tarsius syrichta ENSTSYG00000004324 I
ENSXMAG00000005152 Xiphophorus maculatus ENSXMAG00000005152 I
Gfo_R011843 Geospiza fortis Gfo_R011843 I
LotgiG222832 Lottia gigantea LotgiG222832 I
Myotis_brandtii_ZNF143_10021171 Myotis brandtii Myotis_brandtii_ZNF143_10021171 I
Ocbimv22038914m.g Octopus bimaculoides Ocbimv22038914m.g I
Ogr18895 Ophisaurus gracilis Ogr18895 I
Pvit_03784 Pogona vitticeps Pvit_03784 I
Sakowv30036637m.g Saccoglossus kowalevskii Sakowv30036637m.g I
Sakowv30044960m.g Saccoglossus kowalevskii Sakowv30044960m.g I
SMAR015659 Strigamia maritima SMAR015659 I
Tal_R001092 Tyto alba Tal_R001092 I
Zfp143 Rattus norvegicus ENSRNOG00000010087 I
Zfp143 Mus musculus ENSMUSG00000061079 D
ZNF143 Ochotona princeps ENSOPRG00000005466 I
ZNF143 Gallus gallus ENSGALG00000005787 I
ZNF143 Loxodonta africana ENSLAFG00000004487 I
ZNF143 Homo sapiens ENSG00000166478 D
ZNF143 Felis catus ENSFCAG00000002342 I
ZNF143 Erinaceus europaeus ENSEEUG00000000955 I
ZNF143 Meleagris gallopavo ENSMGAG00000006206 I
ZNF143 Callithrix jacchus ENSCJAG00000011327 I
ZNF143 Cavia porcellus ENSCPOG00000003109 I
ZNF143 Microcebus murinus ENSMICG00000004353 I
ZNF143 Myotis lucifugus ENSMLUG00000000213 I
ZNF143 Macaca mulatta ENSMMUG00000008758 I
ZNF143 Monodelphis domestica ENSMODG00000007909 I
ZNF143 Equus caballus ENSECAG00000018889 I
ZNF143 Tursiops truncatus ENSTTRG00000015353 I
znf143 Takifugu rubripes ENSTRUG00000009324 I
ZNF143 Ornithorhynchus anatinus ENSOANG00000005853 I
znf143 Xenopus tropicalis XB-GENE-1012504 I
ZNF143 Oryctolagus cuniculus ENSOCUG00000005226 I
ZNF143 Sorex araneus ENSSARG00000007780 I
ZNF143 Pan troglodytes ENSPTRG00000003349 I
ZNF143 Otolemur garnettii ENSOGAG00000011518 I
ZNF143 Anolis carolinensis ENSACAG00000009338 I
ZNF143 Canis familiaris ENSCAFG00000007373 I
znf143.S Xenopus laevis XB-GENE-1012509 I
znf143b Tetraodon nigroviridis ENSTNIG00000013739 I
znf143b Oryzias latipes ENSORLG00000001130 I
znf143b Danio rerio ENSDARG00000041581 I
znf143b Gasterosteus aculeatus ENSGACG00000009776 I
ZNF76 Cavia porcellus ENSCPOG00000007381 I
znf76 Danio rerio ENSDARG00000013279 I