CBN10229 (Caenorhabditis brenneri)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 CBN10229 T313324_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
CBN10229 Pipsqueak 155 197
CBN10229 Pipsqueak 346 391

Links

Other Pipsqueak family TFs
Other Caenorhabditis brenneri TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30147.m014313 Ricinus communis 30147.m014313 I
30190.m011119 Ricinus communis 30190.m011119 I
30190.m011120 Ricinus communis 30190.m011120 I
60638.m00016 Ricinus communis 60638.m00016 I
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I
Bo01335s010 Brassica oleracea Bo01335s010 I
Bo3g024240 Brassica oleracea Bo3g024240 I
Bo7g110320 Brassica oleracea Bo7g110320 I
Bo8g050800 Brassica oleracea Bo8g050800 I
Bo8g108050 Brassica oleracea Bo8g108050 I
Bo9g104770 Brassica oleracea Bo9g104770 I
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I
Bra010460 Brassica rapa Bra010460 I
Bra016763 Brassica rapa Bra016763 I
Bra019162 Brassica rapa Bra019162 I
Bra022770 Brassica rapa Bra022770 I
Bra026963 Brassica rapa Bra026963 I
Bra028290 Brassica rapa Bra028290 I
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I
Cagra.2248s0025 Capsella grandiflora Cagra.2248s0025 I
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I
Carubv10005709m.g Capsella rubella Carubv10005709m.g I
Carubv10006809m.g Capsella rubella Carubv10006809m.g I
Carubv10006965m.g Capsella rubella Carubv10006965m.g I
Carubv10010303m.g Capsella rubella Carubv10010303m.g I
Carubv10027759m.g Capsella rubella Carubv10027759m.g I
cassava17064.m1 Manihot esculenta cassava17064.m1 I
cassava35062.m1 Manihot esculenta cassava35062.m1 I
cassava41192.m1 Manihot esculenta cassava41192.m1 I
cassava41218.m1 Manihot esculenta cassava41218.m1 I
Ca_04504 Cicer arietinum Ca_04504 I
Ca_08732 Cicer arietinum Ca_08732 I
Ca_18948 Cicer arietinum Ca_18948 I
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I
CBF4 Arabidopsis lyrata scaffold_801637.1 I
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I
Cla002362 Citrullus lanatus Cla002362 I
Cla006315 Citrullus lanatus Cla006315 I
Cla011674 Citrullus lanatus Cla011674 I
Cucsa.166340 Cucumis sativus Cucsa.166340 I
Cucsa.251030 Cucumis sativus Cucsa.251030 I
Cucsa.302750 Cucumis sativus Cucsa.302750 I
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D
DREB1A Arabidopsis thaliana AT4G25480 D
DREB1B Arabidopsis thaliana AT4G25490 D
DREB1C Arabidopsis thaliana AT4G25470 D
DREB1D Arabidopsis thaliana AT5G51990 D
DREB1E Oryza indica BGIOSGA016950 I
DREB1E Oryza sativa OS04G0572400 D
DREB1F Arabidopsis thaliana AT1G12610 D
DREB1G Oryza indica BGIOSGA008804 I
DREB1G Oryza sativa OS02G0677300 D
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I
GLYMA01G42500 Glycine max GLYMA01G42500 I
GLYMA09G27180 Glycine max GLYMA09G27180 I
GLYMA10G38440 Glycine max GLYMA10G38440 I
GLYMA11G19341 Glycine max GLYMA11G19341 I
GLYMA12G09130 Glycine max GLYMA12G09130 I
GLYMA12G30710 Glycine max GLYMA12G30710 I
GLYMA12G30740 Glycine max GLYMA12G30740 I
GLYMA13G39540 Glycine max GLYMA13G39540 I
GLYMA20G29410 Glycine max GLYMA20G29410 I
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I
GRMZM2G042756 Zea mays GRMZM2G042756 I
GRMZM2G137341 Zea mays GRMZM2G137341 I
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I
LPERR02G22610 Leersia perrieri LPERR02G22610 I
LPERR04G18190 Leersia perrieri LPERR04G18190 I
Lus10001871.g Linum usitatissimum Lus10001871.g I
Lus10006332.g Linum usitatissimum Lus10006332.g I
Lus10006334.g Linum usitatissimum Lus10006334.g I
Lus10017829.g Linum usitatissimum Lus10017829.g I
Lus10019455.g Linum usitatissimum Lus10019455.g I
Lus10027412.g Linum usitatissimum Lus10027412.g I
Lus10029601.g Linum usitatissimum Lus10029601.g I
Lus10029602.g Linum usitatissimum Lus10029602.g I
Lus10031657.g Linum usitatissimum Lus10031657.g I
MDP0000154764 Malus domestica MDP0000154764 I
MDP0000198054 Malus domestica MDP0000198054 I
mgf016974m Mimulus guttatus mgf016974m I
mgf017136m Mimulus guttatus mgf017136m I
mgf018631m Mimulus guttatus mgf018631m I
mgf018934m Mimulus guttatus mgf018934m I
mgf019061m Mimulus guttatus mgf019061m I
mgf022408m Mimulus guttatus mgf022408m I
mgf026339m Mimulus guttatus mgf026339m I
mgf026642m Mimulus guttatus mgf026642m I
MLOC_75886 Hordeum vulgare MLOC_75886 I
MTR_1g101600 Medicago truncatula MTR_1g101600 I
MTR_2g085015 Medicago truncatula MTR_2g085015 I
MTR_5g010930 Medicago truncatula MTR_5g010930 I
MTR_6g465420 Medicago truncatula MTR_6g465420 I
MTR_6g465430 Medicago truncatula MTR_6g465430 I
MTR_6g465450 Medicago truncatula MTR_6g465450 I
MTR_6g465460 Medicago truncatula MTR_6g465460 I
MTR_6g465510 Medicago truncatula MTR_6g465510 I
MTR_6g465530 Medicago truncatula MTR_6g465530 I
MTR_6g465690 Medicago truncatula MTR_6g465690 I
MTR_6g465850 Medicago truncatula MTR_6g465850 I
MTR_6g466000 Medicago truncatula MTR_6g466000 I
MTR_6g466130 Medicago truncatula MTR_6g466130 I
MTR_8g006410 Medicago truncatula MTR_8g006410 I
OBART02G27760 Oryza barthii OBART02G27760 I
OBART04G22220 Oryza barthii OBART04G22220 I
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I
OMERI02G26980 Oryza meridionalis OMERI02G26980 I
OMERI04G18770 Oryza meridionalis OMERI04G18770 I
ONIVA02G30790 Oryza nivara ONIVA02G30790 I
ONIVA04G20840 Oryza nivara ONIVA04G20840 I
OPUNC02G25480 Oryza punctata OPUNC02G25480 I
OPUNC04G19970 Oryza punctata OPUNC04G19970 I
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I
PK23332.1 Cannabis sativa PK23332.1 I
Pm019386 Prunus mume Pm019386 I
Pm023769 Prunus mume Pm023769 I
Pm023772 Prunus mume Pm023772 I
Pm023775 Prunus mume Pm023775 I
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I
Sb04g031950 Sorghum bicolor Sb04g031950 I
Sb06g025900 Sorghum bicolor Sb06g025900 I
Si011005m.g Setaria italica Si011005m.g I
Si018262m.g Setaria italica Si018262m.g I
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I
TCM_016175 Theobroma cacao TCM_016175 I
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I
VIT_06s0061g01390 Vitis vinifera VIT_06s0061g01390 I
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I