Gfo_R008165 (Geospiza fortis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Gfo_R008165 T317786_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rel
M09353_2.00 		Mus musculus
TGKVMTTYCCCHDBH
DVHDGGGRAAKBMCA		 Misc
Kulakovskiy et al.(2013)
REL_MOUSE.H11MO.0.A 		0.805 0.805
REL
M02710_2.00 		Homo sapiens
BGGRNWTTCC
GGAAWNYCCV		 SELEX
Mathelier et al.(2014)
MA0101.1 		0.799 0.799
REL
M09350_2.00 		Homo sapiens
TGKVMTTYCCCHDBH
DVHDGGGRAAKBMCA		 Misc
Kulakovskiy et al.(2013)
REL_HUMAN.H11MO.0.B 		0.799 0.799
REL
M11235_2.00 		Homo sapiens
BGGRNWTTCC
GGAAWNYCCV		 Transfac
Matys et al.(2006)
V$CREL_01 		0.799 0.799
REL
M11236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CREL_Q6 		0.799 0.799
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R008165 Rel 7 175

Links

Other Rel family TFs
Other Geospiza fortis TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006375 Calypte anna Aan_R006375 I 0.982
Afo_R011359 Aptenodytes forsteri Afo_R011359 I 0.982
Brh_R000963 Buceros rhinoceros Brh_R000963 I 0.976
Cmyd_10008594 Chelonia mydas Cmyd_10008594 I 0.817
ENSAMEG00000018236 Ailuropoda melanoleuca ENSAMEG00000018236 I 0.799
ENSAMXG00000004647 Astyanax mexicanus ENSAMXG00000004647 I 0.728
ENSAPLG00000006795 Anas platyrhynchos ENSAPLG00000006795 I 0.953
ENSETEG00000002607 Echinops telfairi ENSETEG00000002607 I 0.772
ENSFALG00000011066 Ficedula albicollis ENSFALG00000011066 I 0.982
ENSLACG00000008544 Latimeria chalumnae ENSLACG00000008544 I 0.746
ENSLOCG00000016127 Lepisosteus oculatus ENSLOCG00000016127 I 0.740
ENSMMUP00000014199 Macaca fascicularis ENSMMUP00000014199 I 0.799
ENSMPUG00000005180 Mustela putorius furo ENSMPUG00000005180 I 0.787
ENSNLEG00000009519 Nomascus leucogenys ENSNLEG00000009519 I 0.799
ENSOARG00000001457 Ovis aries ENSOARG00000001457 I 0.793
ENSONIG00000002983 Oreochromis niloticus ENSONIG00000002983 I 0.728
ENSP00000295025-D1 Bos grunniens ENSP00000295025-D1 I 0.787
ENSPANG00000006148 Papio anubis ENSPANG00000006148 I 0.799
ENSPFOG00000013038 Poecilia formosa ENSPFOG00000013038 I 0.710
ENSPPYG00000012391 Pongo abelii ENSPPYG00000012391 I 0.799
ENSPSIG00000013860 Pelodiscus sinensis ENSPSIG00000013860 I 0.828
ENSSHAG00000014405 Sarcophilus harrisii ENSSHAG00000014405 I 0.787
ENSSTOG00000005785 Ictidomys tridecemlineatus ENSSTOG00000005785 I 0.805
ENSTRUG00000006394 Takifugu rubripes ENSTRUG00000006394 I 0.716
ENSTSYG00000012918 Tarsius syrichta ENSTSYG00000012918 I 0.793
ENSXMAG00000007379 Xiphophorus maculatus ENSXMAG00000007379 I 0.710
Myotis_brandtii_REL_10034307 Myotis brandtii Myotis_brandtii_REL_10034307 I 0.759
Pvit_04537 Pogona vitticeps Pvit_04537 I 0.828
REL Taeniopygia guttata ENSTGUG00000006743 I 0.982
REL Sus scrofa ENSSSCG00000008388 I 0.734
REL Sorex araneus ENSSARG00000011809 I 0.775
REL Vicugna pacos ENSVPAG00000000493 I 0.787
Rel Rattus norvegicus ENSRNOG00000054437 I 0.805
REL Pteropus vampyrus ENSPVAG00000000364 I 0.746
rel Xenopus tropicalis XB-GENE-993262 I 0.751
REL Otolemur garnettii ENSOGAG00000013722 I 0.793
REL Anolis carolinensis ENSACAG00000003030 I 0.816
REL Bos taurus ENSBTAG00000015386 I 0.787
REL Canis familiaris ENSCAFG00000002981 I 0.799
REL Choloepus hoffmanni ENSCHOG00000010935 I 0.716
REL Callithrix jacchus ENSCJAG00000008975 I 0.793
REL Cavia porcellus ENSCPOG00000011659 I 0.781
rel Danio rerio ENSDARG00000055276 I 0.734
REL Equus caballus ENSECAG00000003277 I 0.793
REL Felis catus ENSFCAG00000008018 I 0.799
REL Homo sapiens ENSG00000162924 D 0.799
REL Gallus gallus ENSGALG00000007845 I 0.976
REL Gorilla gorilla ENSGGOG00000024826 I 0.793
REL Loxodonta africana ENSLAFG00000013507 I 0.769
REL Meleagris gallopavo ENSMGAG00000001721 I 0.976
REL Myotis lucifugus ENSMLUG00000007454 I 0.769
REL Macaca mulatta ENSMMUG00000010834 I 0.799
REL Monodelphis domestica ENSMODG00000002172 I 0.805
Rel Mus musculus ENSMUSG00000020275 D 0.805
REL Ornithorhynchus anatinus ENSOANG00000012405 I 0.787
REL Oryctolagus cuniculus ENSOCUG00000004968 I 0.805
REL Pan troglodytes ENSPTRG00000011949 I 0.799
rel.L Xenopus laevis XB-GENE-993266 I 0.751
rel.S Xenopus laevis XB-GENE-17342653 I 0.746
Tal_R011178 Tyto alba Tal_R011178 I 0.860