CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CADANGAG00013568 *(Aspergillus niger)* RFX
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02257 (RFX_DNA_binding)	IPR003150	CADANGAG00013568	T318036_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RFX1 M00066_2.00	Saccharomyces cerevisiae	NSGTTGCYAN	NTRGCAACSN	PBM Badis et al.(2008) RFX1_4537	0.675	0.449
RFX1 M07494_2.00	Saccharomyces cerevisiae	BGTTRCYA	TRGYAACV	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0365.1	0.675	0.449
RFX1 M08600_2.00	Saccharomyces cerevisiae	CGTYRBYAYRGYWACM	KGTWRCYRTRVYRACG	Misc DeBoer et al.(2011) YLR176C_1478	0.675	0.449
RFX1 M08601_2.00	Saccharomyces cerevisiae	BGTTRCYA	TRGYAACV	Misc DeBoer et al.(2011) YLR176C_496	0.675	0.449
RFX1 M11251_2.00	Saccharomyces cerevisiae	Transfac license required	Transfac license required	Transfac Matys et al.(2006) F$RFX1_02	0.675	0.449
daf-19 M00709_2.00	Caenorhabditis elegans	SGTTRCTADG	CHTAGYAACS	PBM Narasimhan et al.(2015) pTH10021	0.654	0.423
XP_002157607.1 M02456_2.00	Hydra magnipapillata	GTHDYYDNVN	NBNHRRHDAC	PBM Weirauch et al.(2014) pTH9199	0.653	0.397
GB41876 M02453_2.00	Apis mellifera	GTHDCYANVN	NBNTRGHDAC	PBM Weirauch et al.(2014) pTH9226	0.653	0.397
Rfx3 M00188_2.00	Mus musculus	SNTRRHDACN	NGTHDYYANS	PBM Badis et al.(2009) Rfx3_3961	0.652	0.397
Rfx3 M03463_2.00	Mus musculus	SGTTRCCATGGYAACS	SGTTRCCATGGYAACS	SELEX Jolma et al.(2013) Rfx3_1	0.652	0.397
Rfx3 M09368_2.00	Mus musculus	BBGTTGCCATGGNRAC	GTYNCCATGGCAACVV	Misc Kulakovskiy et al.(2013) RFX3_MOUSE.H11MO.0.C	0.652	0.397
G4VLF2_SCHMA M02452_2.00	Schistosoma mansoni	GTTGCTAD	HTAGCAAC	PBM Weirauch et al.(2014) pTH8587	0.651	0.385
Sjc_0102030 M02455_2.00	Schistosoma japonicum	GTTRCYANG	CNTRGYAAC	PBM Weirauch et al.(2014) pTH9285	0.651	0.385
RFX1 M02447_2.00	Anolis carolinensis	GTHRCYANGN	NCNTRGYDAC	PBM Weirauch et al.(2014) pTH9223	0.650	0.397
RFX1 M02451_2.00	Tetraodon nigroviridis	GTHDYYANGN	NCNTRRHDAC	PBM Weirauch et al.(2014) pTH9385	0.650	0.397
RFX1 M05723_2.00	Homo sapiens	BGTTRYCATGRYAACV	BGTTRYCATGRYAACV	SELEX Yin et al.(2017) RFX1_eDBD_HT-SELEX	0.650	0.397
Rfx1 M08162_2.00	Mus musculus	GTTGCYADGGNRAC	GTYNCCHTRGCAAC	ChIP-seq Mathelier et al.(2014) MA0509.1	0.650	0.397
RFX1 M09363_2.00	Homo sapiens	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_HUMAN.H11MO.0.B	0.650	0.397
Rfx1 M09367_2.00	Mus musculus	BBBSSNGTTGCCADGGNRMCVV	BBGKYNCCHTGGCAACNSSVVV	Misc Kulakovskiy et al.(2013) RFX1_MOUSE.H11MO.0.A	0.650	0.397
RFX1 M11245_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$EFC_Q6	0.650	0.397
RFX1 M11246_2.00	Homo sapiens	HNGTTRCYWVGYDMYNN	NNRKHRCBWRGYAACND	Transfac Matys et al.(2006) V$RFX1_01	0.650	0.397
RFX1 M11247_2.00	Homo sapiens	HNGTTRCYWBVGYDMYNN	NNRKHRCBVWRGYAACND	Transfac Matys et al.(2006) V$RFX1_02	0.650	0.397
RFX1 M11248_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RFX1_Q6	0.650	0.397
RFX1 M05724_2.00	Homo sapiens	BGTWRYCATGRYWACV	BGTWRYCATGRYWACV	SELEX Yin et al.(2017) RFX1_eDBD_Methyl-HT-SELEX	0.650	0.397
RFX2 M02449_2.00	Homo sapiens	BGTHRYYADG	CHTRRYDACV	PBM Weirauch et al.(2014) pTH9194	0.650	0.372
RFX2 M02450_2.00	Ornithorhynchus anatinus	NGTHRYYANV	BNTRRYDACN	PBM Weirauch et al.(2014) pTH9269	0.650	0.372
RFX3 M03452_2.00	Homo sapiens	NGTTRCCATGGHAACV	BGTTDCCATGGYAACN	SELEX Jolma et al.(2013) RFX3_1	0.650	0.397
RFX3 M03453_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Jolma et al.(2013) RFX3_2	0.650	0.397
RFX3 M02750_2.00	Homo sapiens	GTTRYYATGG	CCATRRYAAC	SELEX Jolma et al.(2010) RFX3_dimer	0.650	0.397
RFX3 M05715_2.00	Homo sapiens	NGTTRYYATRRYAACN	NGTTRYYATRRYAACN	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_1	0.650	0.397
RFX3 M05716_2.00	Homo sapiens	BGTTGCTARGCAACS	SGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_HT-SELEX_2	0.650	0.397
RFX3 M09361_2.00	Homo sapiens	BGTTRCCATGGYRN	NYRCCATGGYAACV	Misc Kulakovskiy et al.(2013) RFX3_HUMAN.H11MO.0.B	0.650	0.397
RFX3 M09627_2.00	Homo sapiens	BNGTTGCCATGGCAAC	GTTGCCATGGCAACNV	Misc Heinz et al.(2010) K562-RFX3_SRA012198	0.650	0.397
RFX3 M05717_2.00	Homo sapiens	BGTTRYYATRRYAACV	BGTTRYYATRRYAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_1	0.650	0.397
RFX3 M05718_2.00	Homo sapiens	BGTTGCTARGCAACV	BGTTGCYTAGCAACV	SELEX Yin et al.(2017) RFX3_eDBD_Methyl-HT-SELEX_2	0.650	0.397
For this family, TFs with SR scores > 0.650* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CADANGAP00013319	RFX	242	319	QVFAMIWLKENCRKSSGSVRRDRVYCCYAEKCGTERVSVLNPASFGKLVRIIFPNVQTRRLGVRGESKYHYVDLTVIE

Links
Other RFX family TFs
Other *Aspergillus niger* TFs

457 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL017280	Aedes aegypti	AAEL017280	N	0.000
ACEP26642	Atta cephalotes	ACEP26642	N	0.000
AFAF010393	Anopheles farauti	AFAF010393	N	0.000
AFUN009891	Anopheles funestus	AFUN009891	N	0.000
AMEM013442	Anopheles merus	AMEM013442	N	0.000
ANCCAN_09492	Ancylostoma caninum	ANCCAN_09492	N	0.000
ANCCEY_03110	Ancylostoma ceylanicum	ANCCEY_03110	N	0.000
ANCDUO_04788	Ancylostoma duodenale	ANCDUO_04788	N	0.000
ASTEI11512	Anopheles stephensi	ASTEI11512	N	0.000
augustus_masked-nMf.1.1.scaf10960-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf10960-processed-gene-0.0	I	0.000
BGIBMGA010273	Bombyx mori	BGIBMGA010273	N	0.000
Bm1891	Brugia malayi	Bm1891	N	0.000
BTMF_0001195401	Brugia timori	BTMF_0001195401	N	0.000
BXY_0663500	Bursaphelenchus xylophilus	BXY_0663500	N	0.000
CBG12337	Caenorhabditis briggsae	CBG12337	N	0.000
CBN07938	Caenorhabditis brenneri	CBN07938	N	0.000
Cflo_01219--XP_395512.3_APIME	Camponotus floridanus	Cflo_01219--XP_395512.3_APIME	N	0.000
CJA11729	Caenorhabditis japonica	CJA11729	N	0.000
CLEC012210	Cimex lectularius	CLEC012210	N	0.000
CRE29533	Caenorhabditis remanei	CRE29533	N	0.000
DAPPUDRAFT_327651	Daphnia pulex	DAPPUDRAFT_327651	N	0.000
DME_0001005001	Dracunculus medinensis	DME_0001005001	N	0.000
EEL_0001008901	Elaeophora elaphi	EEL_0001008901	N	0.000
EVEC_0000024601	Enterobius vermicularis	EVEC_0000024601	N	0.000
GA26236	Drosophila pseudoobscura	FBgn0247610	N	0.000
GB44899	Apis mellifera	GB44899	N	0.000
GF23141	Drosophila ananassae	FBgn0100135	N	0.000
GG16758	Drosophila erecta	FBgn0108988	N	0.000
GH15872	Drosophila grimshawi	FBgn0123343	N	0.000
GI23637	Drosophila mojavensis	FBgn0146363	N	0.000
GJ24712	Drosophila virilis	FBgn0211788	N	0.000
GK22507	Drosophila willistoni	FBgn0224484	N	0.000
GM15347	Drosophila sechellia	FBgn0170267	N	0.000
GPUH_0000112301	Gongylonema pulchrum	GPUH_0000112301	N	0.000
HCOI00324200	Haemonchus contortus	HCOI00324200	N	0.000
HHAL005964-PA	Halyomorpha halys	HHAL005964-PA	N	0.000
HPBE_0000983501	Heligmosomoides bakeri	HPBE_0000983501	N	0.000
HPLM_0000291901	Haemonchus placei	HPLM_0000291901	N	0.000
Hsal_01939--XP_395512.3_APIME	Harpegnathos saltator	Hsal_01939--XP_395512.3_APIME	N	0.000
ISCW014189	Ixodes scapularis	ISCW014189	I	0.000
KGM_12579	Danaus plexippus	KGM_12579	N	0.000
L596_g4117	Steinernema carpocapsae	L596_g4117	N	0.000
L889_g180	Steinernema feltiae	L889_g180	N	0.000
L892_g19705	Steinernema scapterisci	L892_g19705	N	0.000
L893_g29191	Steinernema glaseri	L893_g29191	N	0.000
L898_g7337	Steinernema monticolum	L898_g7337	N	0.000
LCUP015823	Lucilia cuprina	LCUP015823	N	0.000
LDEC011073	Leptinotarsa decemlineata	LDEC011073	I	0.000
let-526	Caenorhabditis elegans	WBGene00002717	N	0.000
MhA1_Contig163.frz3.gene26	Meloidogyne hapla	MhA1_Contig163.frz3.gene26	I	0.000
nAv.1.0.1.g00338	Acanthocheilonema viteae	nAv.1.0.1.g00338	N	0.000
NBR_0002081701	Nippostrongylus brasiliensis	NBR_0002081701	N	0.000
nDi.2.2.2.g04479	Dirofilaria immitis	nDi.2.2.2.g04479	N	0.000
NECAME_01002	Necator americanus	NECAME_01002	N	0.000
nLs.2.1.2.g09434	Litomosoides sigmodontis	nLs.2.1.2.g09434	N	0.000
nOo.2.0.1.g08403	Onchocerca ochengi	nOo.2.0.1.g08403	N	0.000
OESDEN_04600	Oesophagostomum dentatum	OESDEN_04600	N	0.000
OFLC_0001383401	Onchocerca flexuosa	OFLC_0001383401	N	0.000
osa	Drosophila yakuba	FBgn0041640	N	0.000
osa	Drosophila melanogaster	FBgn0261885	N	0.000
PEQ_0000742201	Parascaris equorum	PEQ_0000742201	N	0.000
PHUM080380	Pediculus humanus	PHUM080380	N	0.000
PPA05721	Pristionchus pacificus	PPA05721	N	0.000
PPAI002183	Phlebotomus papatasi	PPAI002183	N	0.000
PTRK_0001699800	Parastrongyloides trichosuri	PTRK_0001699800	N	0.000
RSKR_0000271300	Rhabditophanes kr3021	RSKR_0000271300	N	0.000
SBAD_0000668001	Soboliphyme baturini	SBAD_0000668001	N	0.000
scaffold2015-EXSNAP2012.2	Pristionchus exspectatus	scaffold2015-EXSNAP2012.2	N	0.000
SINV22763	Solenopsis invicta	SINV22763	N	0.000
SMAR003184	Strigamia maritima	SMAR003184	I	0.000
SMAR006121	Strigamia maritima	SMAR006121	I	0.000
SPAL_0001124500	Strongyloides papillosus	SPAL_0001124500	N	0.000
SVE_1830100	Strongyloides venezuelensis	SVE_1830100	N	0.000
TC013586	Tribolium castaneum	TC013586	N	0.000
TCLT_0000619901	Thelazia callipaeda	TCLT_0000619901	N	0.000
TCNE_0000128301	Toxocara canis	TCNE_0000128301	N	0.000
TELCIR_03263	Teladorsagia circumcincta	TELCIR_03263	N	0.000
WBGene00237224	Onchocerca volvulus	WBGene00237224	N	0.000
WUBG_00477	Wuchereria bancrofti	WUBG_00477	N	0.000
YQE_09239	Dendroctonus ponderosae	YQE_09239	N	0.000

CADANGAG00013568 (Aspergillus niger) RFX

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

457 Related TFs

CADANGAG00013568 **(Aspergillus niger)
RFX**