ENSLOCG00000013505 (Lepisosteus oculatus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSLOCG00000013505 T318304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.785 0.962
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.785 0.962
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.785 0.962
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.785 0.962
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.715 0.633
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.715 0.633
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.715 0.633
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.715 0.633
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.715 0.633
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.715 0.633
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.715 0.633
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.715 0.633
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.715 0.633
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.715 0.633
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.715 0.633
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.715 0.633
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.715 0.633
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.715 0.633
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.715 0.633
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000016649 RFX 98 176

Links

Other RFX family TFs
Other Lepisosteus oculatus TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015146 Ailuropoda melanoleuca ENSAMEG00000015146 N 0.000
ENSBTAG00000026286 Bos taurus ENSBTAG00000026286 N 0.000
ENSBTAP00000012908-D1 Bos grunniens ENSBTAP00000012908-D1 N 0.000
ENSCAFG00000011367 Canis familiaris ENSCAFG00000011367 N 0.000
ENSCPOG00000022638 Cavia porcellus ENSCPOG00000022638 N 0.000
ENSCSAG00000018260 Chlorocebus sabaeus ENSCSAG00000018260 N 0.000
ENSDNOG00000043641 Dasypus novemcinctus ENSDNOG00000043641 N 0.000
ENSDNOG00000046682 Dasypus novemcinctus ENSDNOG00000046682 N 0.000
ENSECAG00000021592 Equus caballus ENSECAG00000021592 N 0.000
ENSLAFG00000013081 Loxodonta africana ENSLAFG00000013081 N 0.000
ENSMLUG00000024497 Myotis lucifugus ENSMLUG00000024497 N 0.000
ENSMMUG00000017270 Macaca mulatta ENSMMUG00000017270 N 0.000
ENSMPUG00000016180 Mustela putorius furo ENSMPUG00000016180 N 0.000
ENSOARG00000010976 Ovis aries ENSOARG00000010976 N 0.000
ENSOCUG00000022131 Oryctolagus cuniculus ENSOCUG00000022131 N 0.000
ENSOGAG00000000844 Otolemur garnettii ENSOGAG00000000844 N 0.000
ENSP00000393677 Macaca fascicularis ENSP00000393677 N 0.000
ENSPANG00000018076 Papio anubis ENSPANG00000018076 N 0.000
ENSPPYG00000017480 Pongo abelii ENSPPYG00000017480 N 0.000
ENSPTRG00000019295 Pan troglodytes ENSPTRG00000019295 N 0.000
ENSPVAG00000005368 Pteropus vampyrus ENSPVAG00000005368 N 0.000
gtf2i Xenopus tropicalis XB-GENE-1217437 N 0.000
GTF2IRD2 Homo sapiens ENSG00000196275 N 0.000
Gtf2ird2 Mus musculus ENSMUSG00000015942 N 0.000
GTF2IRD2B Homo sapiens ENSG00000174428 N 0.000
Myotis_brandtii_GTF2IRD2_10014292 Myotis brandtii Myotis_brandtii_GTF2IRD2_10014292 N 0.000