RFX7 (Procavia capensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSPCAG00000004974 T318438_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.793 1.000
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.793 1.000
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.793 1.000
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.793 1.000
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.710 0.620
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.710 0.620
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.710 0.620
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.710 0.620
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.710 0.620
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.710 0.620
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.710 0.620
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.710 0.620
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.710 0.620
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.710 0.620
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.710 0.620
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.710 0.620
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.710 0.620
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.710 0.620
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000004676 RFX 8 86

Links

Other RFX family TFs
Other Procavia capensis TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008662 Calypte anna Aan_R008662 I 0.000
ACEP25962 Atta cephalotes ACEP25962 N 0.000
Afo_R011060 Aptenodytes forsteri Afo_R011060 I 0.000
Alligator_sinensis_CCG004973.1 Alligator sinensis Alligator_sinensis_CCG004973.1 N 0.000
ARID2 Felis catus ENSFCAG00000012831 N 0.000
ARID2 Monodelphis domestica ENSMODG00000018527 N 0.000
ARID2 Macaca mulatta ENSMMUG00000015962 N 0.000
ARID2 Canis familiaris ENSCAFG00000009335 N 0.000
ARID2 Myotis lucifugus ENSMLUG00000006908 N 0.000
ARID2 Microcebus murinus ENSMICG00000001487 N 0.000
ARID2 Pteropus vampyrus ENSPVAG00000009834 N 0.000
ARID2 Sorex araneus ENSSARG00000007415 N 0.000
ARID2 Loxodonta africana ENSLAFG00000004415 N 0.000
ARID2 Vicugna pacos ENSVPAG00000004779 N 0.000
ARID2 Equus caballus ENSECAG00000019032 N 0.000
ARID2 Dasypus novemcinctus ENSDNOG00000014939 N 0.000
ARID2 Otolemur garnettii ENSOGAG00000024418 N 0.000
ARID2 Bos taurus ENSBTAG00000011087 N 0.000
ARID2 Oryctolagus cuniculus ENSOCUG00000013306 N 0.000
ARID2 Homo sapiens ENSG00000189079 N 0.000
Brh_R002885 Buceros rhinoceros Brh_R002885 I 0.000
CapteG183181 Capitella teleta CapteG183181 I 0.000
CBG00885 Caenorhabditis briggsae CBG00885 I 0.000
Cflo_11031--XP_001120115.1_APIME Camponotus floridanus Cflo_11031--XP_001120115.1_APIME N 0.000
CLEC001081 Cimex lectularius CLEC001081 N 0.000
Cmyd_10012613 Chelonia mydas Cmyd_10012613 N 0.000
daf-19 Caenorhabditis elegans WBGene00000914 D 0.000
DAPPUDRAFT_42744 Daphnia pulex DAPPUDRAFT_42744 I 0.000
ENSAMEG00000016059 Ailuropoda melanoleuca ENSAMEG00000016059 I 0.000
ENSAMXG00000020148 Astyanax mexicanus ENSAMXG00000020148 I 0.000
ENSAPLG00000005849 Anas platyrhynchos ENSAPLG00000005849 I 0.000
ENSBTAP00000000169-D1 Bos grunniens ENSBTAP00000000169-D1 I 0.000
ENSCING00000006777 Ciona intestinalis ENSCING00000006777 N 0.000
ENSCSAG00000002952 Chlorocebus sabaeus ENSCSAG00000002952 I 0.000
ENSCSAG00000006749 Chlorocebus sabaeus ENSCSAG00000006749 N 0.000
ENSFALG00000013407 Ficedula albicollis ENSFALG00000013407 I 0.000
ENSGMOG00000004267 Gadus morhua ENSGMOG00000004267 I 0.000
ENSLACG00000005013 Latimeria chalumnae ENSLACG00000005013 N 0.000
ENSLACG00000017280 Latimeria chalumnae ENSLACG00000017280 I 0.000
ENSLACG00000022645 Latimeria chalumnae ENSLACG00000022645 I 0.000
ENSLOCG00000015258 Lepisosteus oculatus ENSLOCG00000015258 I 0.000
ENSMMUP00000020998 Macaca fascicularis ENSMMUP00000020998 N 0.000
ENSNLEG00000006695 Nomascus leucogenys ENSNLEG00000006695 I 0.000
ENSOANG00000005534 Ornithorhynchus anatinus ENSOANG00000005534 I 0.000
ENSOANG00000010834 Ornithorhynchus anatinus ENSOANG00000010834 N 0.000
ENSOARG00000017616 Ovis aries ENSOARG00000017616 I 0.000
ENSP00000335044-D1 Bos grunniens ENSP00000335044-D1 N 0.000
ENSP00000350552 Macaca fascicularis ENSP00000350552 I 0.000
ENSPANG00000006357 Papio anubis ENSPANG00000006357 I 0.000
ENSPANG00000015334 Papio anubis ENSPANG00000015334 N 0.000
ENSPMAG00000008289 Petromyzon marinus ENSPMAG00000008289 N 0.000
ENSPPYG00000004906 Pongo abelii ENSPPYG00000004906 I 0.000
ENSPSIG00000015178 Pelodiscus sinensis ENSPSIG00000015178 I 0.000
ENSSHAG00000013027 Sarcophilus harrisii ENSSHAG00000013027 I 0.000
ENSSSCG00000030685 Sus scrofa ENSSSCG00000030685 N 0.000
ENSTGUG00000011025 Taeniopygia guttata ENSTGUG00000011025 I 0.000
ENSTSYG00000008562 Tarsius syrichta ENSTSYG00000008562 I 0.000
ENSXMAG00000006636 Xiphophorus maculatus ENSXMAG00000006636 N 0.000
Gfo_R004629 Geospiza fortis Gfo_R004629 I 0.000
HelroG195033 Helobdella robusta HelroG195033 N 0.000
Hsal_11764--XP_001120115.1_APIME Harpegnathos saltator Hsal_11764--XP_001120115.1_APIME N 0.000
ISCW014107 Ixodes scapularis ISCW014107 N 0.000
LotgiG113173 Lottia gigantea LotgiG113173 I 0.000
Myotis_brandtii_ARID2_10029493 Myotis brandtii Myotis_brandtii_ARID2_10029493 N 0.000
Myotis_brandtii_RFX4_10020417 Myotis brandtii Myotis_brandtii_RFX4_10020417 I 0.000
NEMVEDRAFT_v1g122918 Nematostella vectensis NEMVEDRAFT_v1g122918 I 0.000
Ocbimv22031898m.g Octopus bimaculoides Ocbimv22031898m.g N 0.000
PHUM060660 Pediculus humanus PHUM060660 N 0.000
PTSG_01032 Salpingoeca rosetta PTSG_01032 I 0.000
rfx4 Danio rerio ENSDARG00000026395 I 0.000
RFX4 Cavia porcellus ENSCPOG00000001750 D 0.000
RFX4 Canis familiaris ENSCAFG00000001813 I 0.000
RFX4 Anolis carolinensis ENSACAG00000015355 I 0.000
RFX4 Macaca mulatta ENSMMUG00000022118 I 0.000
Rfx4 Dipodomys ordii ENSDORG00000003959 I 0.000
RFX4 Equus caballus ENSECAG00000005111 I 0.000
RFX4 Felis catus ENSFCAG00000015618 I 0.000
RFX4 Gallus gallus ENSGALG00000012647 I 0.000
Rfx4 Mus musculus ENSMUSG00000020037 D 0.000
RFX4 Myotis lucifugus ENSMLUG00000016257 I 0.000
RFX4 Oryctolagus cuniculus ENSOCUG00000028228 I 0.000
RFX4 Otolemur garnettii ENSOGAG00000003546 I 0.000
RFX4 Ochotona princeps ENSOPRG00000008616 I 0.000
RFX4 Pan troglodytes ENSPTRG00000005391 I 0.000
RFX4 Pteropus vampyrus ENSPVAG00000005862 I 0.000
RFX4 Meleagris gallopavo ENSMGAG00000012867 I 0.000
RFX4 Loxodonta africana ENSLAFG00000014122 I 0.000
RFX4 Tupaia belangeri ENSTBEG00000014680 I 0.000
RFX4 Tursiops truncatus ENSTTRG00000010688 I 0.000
RFX4 Gorilla gorilla ENSGGOG00000007759 I 0.000
RFX4 Homo sapiens ENSG00000111783 D 0.000
RSKR_0000997500 Rhabditophanes kr3021 RSKR_0000997500 N 0.000
Sakowv30024145m.g Saccoglossus kowalevskii Sakowv30024145m.g N 0.000
Sakowv30039514m.g Saccoglossus kowalevskii Sakowv30039514m.g I 0.000
SINV17530 Solenopsis invicta SINV17530 N 0.000
SPU_026159 Strongylocentrotus purpuratus SPU_026159 N 0.000
Tal_R007164 Tyto alba Tal_R007164 N 0.000