RFX7 (Tupaia belangeri)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTBEG00000014637 T318524_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.684 0.547
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.684 0.547
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.684 0.547
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.684 0.547
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.656 0.358
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.656 0.358
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.656 0.358
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.656 0.358
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.656 0.358
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.656 0.358
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.656 0.358
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.656 0.358
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.656 0.358
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.656 0.358
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.656 0.358
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.656 0.358
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.656 0.358
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.656 0.358
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.656 0.358
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTBEP00000012703 RFX 8 80

Links

Other RFX family TFs
Other Tupaia belangeri TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI2G12950 Brachypodium distachyon BRADI2G12950 N 0.000
F775_01832 Aegilops tauschii F775_01832 N 0.000
GRMZM2G010085 Zea mays GRMZM2G010085 N 0.000
LPERR01G13970 Leersia perrieri LPERR01G13970 N 0.000
mgf011812m Mimulus guttatus mgf011812m N 0.000
MLOC_10329 Hordeum vulgare MLOC_10329 N 0.000
OB01G25270 Oryza brachyantha OB01G25270 N 0.000
OBART01G15490 Oryza barthii OBART01G15490 N 0.000
OGLUM01G17850 Oryza glumaepatula OGLUM01G17850 N 0.000
OLONG_013778 Oryza longistaminata OLONG_013778 N 0.000
OMERI01G14330 Oryza meridionalis OMERI01G14330 N 0.000
OPUNC01G16280 Oryza punctata OPUNC01G16280 N 0.000
ORGLA01G0126700 Oryza glaberrima ORGLA01G0126700 N 0.000
ORUFI01G17280 Oryza rufipogon ORUFI01G17280 N 0.000
OS01G0367900 Oryza sativa OS01G0367900 N 0.000
Pavir.Ea01374 Panicum virgatum Pavir.Ea01374 N 0.000
Pavir.Eb01430 Panicum virgatum Pavir.Eb01430 N 0.000
Pavir.J08354 Panicum virgatum Pavir.J08354 N 0.000
Pavir.J38656 Panicum virgatum Pavir.J38656 N 0.000
PGSC0003DMG400030785 Solanum tuberosum PGSC0003DMG400030785 N 0.000
Sb03g014780 Sorghum bicolor Sb03g014780 N 0.000
SELMODRAFT_162307 Selaginella moellendorffii SELMODRAFT_162307 N 0.000
Si000122m.g Setaria italica Si000122m.g N 0.000
Solyc06g054560.2 Solanum lycopersicum Solyc06g054560.2 N 0.000
Traes_1AS_0523686DD Triticum aestivum Traes_1AS_0523686DD N 0.000
Traes_1DS_0761D66A3 Triticum aestivum Traes_1DS_0761D66A3 N 0.000
TRIUR3_20056 Triticum urartu TRIUR3_20056 N 0.000