RFX3 (Tupaia belangeri)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTBEG00000016009 T318527_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.760 1.000
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.760 1.000
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.760 1.000
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.760 1.000
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.760 1.000
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.760 1.000
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.760 1.000
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.760 1.000
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.760 1.000
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.758 0.968
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.758 0.968
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.758 0.968
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.758 0.968
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.758 0.968
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.758 0.968
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.756 0.952
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.756 0.952
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.756 0.952
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.756 0.952
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.749 0.952
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.749 0.952
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.749 0.952
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.747 0.921
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.747 0.921
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.744 0.857
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.744 0.857
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.744 0.857
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.744 0.857
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.744 0.857
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.744 0.857
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.744 0.857
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.744 0.857
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.744 0.857
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.744 0.857
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.744 0.857
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.741 0.825
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.738 0.762
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.738 0.794
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.737 0.778
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.733 0.778
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.733 0.778
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.733 0.778
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.733 0.778
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.733 0.778
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.724 0.810
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.712 0.635
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.693 0.619
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.693 0.619
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.693 0.619
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.693 0.619
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.693 0.619
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.693 0.619
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.673 0.587
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTBEP00000013920 RFX 181 247

Links

Other RFX family TFs
Other Tupaia belangeri TFs

643 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0001180201 Angiostrongylus cantonensis ACAC_0001180201 I 0.000
ACOC_0000732601 Angiostrongylus costaricensis ACOC_0000732601 I 0.000
ANCCAN_12539 Ancylostoma caninum ANCCAN_12539 I 0.000
ANCCAN_18459 Ancylostoma caninum ANCCAN_18459 I 0.000
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I 0.000
ASIM_0001589901 Anisakis simplex ASIM_0001589901 I 0.000
ASU_10946 Ascaris suum ASU_10946 I 0.000
Bm12053 Brugia malayi Bm12053 I 0.000
Bm14724 Brugia malayi Bm14724 I 0.000
Bm4894 Brugia malayi Bm4894 I 0.000
BTMF_0000273701 Brugia timori BTMF_0000273701 I 0.000
BTMF_0001198801 Brugia timori BTMF_0001198801 I 0.000
BXY_0008800 Bursaphelenchus xylophilus BXY_0008800 I 0.000
BXY_0011200 Bursaphelenchus xylophilus BXY_0011200 I 0.000
BXY_1595900 Bursaphelenchus xylophilus BXY_1595900 I 0.000
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I 0.000
CBG07552 Caenorhabditis briggsae CBG07552 I 0.000
CBG19604 Caenorhabditis briggsae CBG19604 I 0.000
CBN07936 Caenorhabditis brenneri CBN07936 I 0.000
CBN19233 Caenorhabditis brenneri CBN19233 I 0.000
CBN20828 Caenorhabditis brenneri CBN20828 I 0.000
CJA04720 Caenorhabditis japonica CJA04720 I 0.000
CJA13646 Caenorhabditis japonica CJA13646 I 0.000
CRE06667 Caenorhabditis remanei CRE06667 I 0.000
CRE15289 Caenorhabditis remanei CRE15289 I 0.000
DICVIV_11945 Dictyocaulus viviparus DICVIV_11945 I 0.000
DME_0000480501 Dracunculus medinensis DME_0000480501 I 0.000
DME_0000960901 Dracunculus medinensis DME_0000960901 I 0.000
GPLIN_000268400 Globodera pallida GPLIN_000268400 I 0.000
GPLIN_000669000 Globodera pallida GPLIN_000669000 I 0.000
GPUH_0000393501 Gongylonema pulchrum GPUH_0000393501 I 0.000
Hba_14163 Heterorhabditis bacteriophora Hba_14163 I 0.000
HCOI01268300 Haemonchus contortus HCOI01268300 I 0.000
HCOI02077900 Haemonchus contortus HCOI02077900 I 0.000
L596_g20569 Steinernema carpocapsae L596_g20569 I 0.000
L596_g25297 Steinernema carpocapsae L596_g25297 I 0.000
L596_g25666 Steinernema carpocapsae L596_g25666 I 0.000
L596_g27086 Steinernema carpocapsae L596_g27086 I 0.000
L596_g27130 Steinernema carpocapsae L596_g27130 I 0.000
L596_g3812 Steinernema carpocapsae L596_g3812 I 0.000
L889_g29204 Steinernema feltiae L889_g29204 I 0.000
L889_g29246 Steinernema feltiae L889_g29246 I 0.000
L889_g5777 Steinernema feltiae L889_g5777 I 0.000
L889_g6303 Steinernema feltiae L889_g6303 I 0.000
L889_g8361 Steinernema feltiae L889_g8361 I 0.000
L892_g19201 Steinernema scapterisci L892_g19201 I 0.000
L892_g21738 Steinernema scapterisci L892_g21738 I 0.000
L892_g650 Steinernema scapterisci L892_g650 I 0.000
L893_g27196 Steinernema glaseri L893_g27196 I 0.000
L893_g29388 Steinernema glaseri L893_g29388 I 0.000
L893_g29555 Steinernema glaseri L893_g29555 I 0.000
L893_g6878 Steinernema glaseri L893_g6878 I 0.000
L898_g10316 Steinernema monticolum L898_g10316 I 0.000
L898_g14928 Steinernema monticolum L898_g14928 I 0.000
L898_g23965 Steinernema monticolum L898_g23965 I 0.000
L898_g24498 Steinernema monticolum L898_g24498 I 0.000
L898_g4801 Steinernema monticolum L898_g4801 I 0.000
LOAG_05485 Loa loa LOAG_05485 I 0.000
LOAG_18352 Loa loa LOAG_18352 I 0.000
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I 0.000
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I 0.000
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I 0.000
Minc01725 Meloidogyne incognita Minc01725 I 0.000
Minc13525 Meloidogyne incognita Minc13525 I 0.000
Minc15420 Meloidogyne incognita Minc15420 I 0.000
nAv.1.0.1.g01698 Acanthocheilonema viteae nAv.1.0.1.g01698 I 0.000
nAv.1.0.1.g09896 Acanthocheilonema viteae nAv.1.0.1.g09896 I 0.000
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I 0.000
nDi.2.2.2.g02781 Dirofilaria immitis nDi.2.2.2.g02781 I 0.000
nDi.2.2.2.g05078 Dirofilaria immitis nDi.2.2.2.g05078 I 0.000
NECAME_04545 Necator americanus NECAME_04545 I 0.000
NECAME_05125 Necator americanus NECAME_05125 I 0.000
nhr-3 Caenorhabditis elegans WBGene00003602 D 0.000
nhr-88 Caenorhabditis elegans WBGene00003678 I 0.000
nLs.2.1.2.g05858 Litomosoides sigmodontis nLs.2.1.2.g05858 I 0.000
nLs.2.1.2.g08709 Litomosoides sigmodontis nLs.2.1.2.g08709 I 0.000
nOo.2.0.1.g04046 Onchocerca ochengi nOo.2.0.1.g04046 I 0.000
nOo.2.0.1.g05901 Onchocerca ochengi nOo.2.0.1.g05901 I 0.000
OESDEN_02943 Oesophagostomum dentatum OESDEN_02943 I 0.000
OESDEN_17109 Oesophagostomum dentatum OESDEN_17109 I 0.000
OFLC_0000776201 Onchocerca flexuosa OFLC_0000776201 I 0.000
OFLC_0001511801 Onchocerca flexuosa OFLC_0001511801 I 0.000
PEQ_0000633601 Parascaris equorum PEQ_0000633601 I 0.000
PPA02306 Pristionchus pacificus PPA02306 I 0.000
PPA20304 Pristionchus pacificus PPA20304 I 0.000
PPA21285 Pristionchus pacificus PPA21285 I 0.000
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I 0.000
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I 0.000
scaffold180-EXSNAP2012.20 Pristionchus exspectatus scaffold180-EXSNAP2012.20 I 0.000
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I 0.000
SMUV_0000428701 Syphacia muris SMUV_0000428701 I 0.000
SMUV_0000859101 Syphacia muris SMUV_0000859101 I 0.000
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I 0.000
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 I 0.000
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I 0.000
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I 0.000
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I 0.000
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I 0.000
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I 0.000
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I 0.000
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I 0.000
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I 0.000
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I 0.000
SVUK_0001012101 Strongylus vulgaris SVUK_0001012101 I 0.000
TCLT_0000173501 Thelazia callipaeda TCLT_0000173501 I 0.000
TCNE_0001780601 Toxocara canis TCNE_0001780601 I 0.000
TELCIR_01879 Teladorsagia circumcincta TELCIR_01879 I 0.000
WBGene00241910 Onchocerca volvulus WBGene00241910 I 0.000
WBGene00248075 Onchocerca volvulus WBGene00248075 I 0.000
WUBG_08518 Wuchereria bancrofti WUBG_08518 I 0.000
WUBG_10752 Wuchereria bancrofti WUBG_10752 I 0.000