RFX7 (Vicugna pacos)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSVPAG00000012402 T318567_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.793 1.000
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.793 1.000
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.793 1.000
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.793 1.000
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.710 0.620
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.710 0.620
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.710 0.620
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.710 0.620
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.710 0.620
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.710 0.620
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.710 0.620
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.710 0.620
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.710 0.620
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.710 0.620
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.710 0.620
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.710 0.620
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.710 0.620
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.710 0.620
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000011534 RFX 8 86

Links

Other RFX family TFs
Other Vicugna pacos TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29968.m000644 Ricinus communis 29968.m000644 I 0.000
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.000
Bo7g078820 Brassica oleracea Bo7g078820 I 0.000
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.000
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.000
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.000
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.000
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.000
Cla005897 Citrullus lanatus Cla005897 N 0.000
Cucsa.012070 Cucumis sativus Cucsa.012070 N 0.000
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.000
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.000
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.000
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.000
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.000
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.000
Lus10003680.g Linum usitatissimum Lus10003680.g N 0.000
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.000
Lus10028998.g Linum usitatissimum Lus10028998.g N 0.000
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.000
MDP0000290118 Malus domestica MDP0000290118 I 0.000
mgf026615m Mimulus guttatus mgf026615m N 0.000
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.000
PGSC0003DMG400029466 Solanum tuberosum PGSC0003DMG400029466 N 0.000
PK02661.1 Cannabis sativa PK02661.1 I 0.000
Pm005894 Prunus mume Pm005894 I 0.000
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.000
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.000
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.000
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.000
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.000
Solyc04g008090.2 Solanum lycopersicum Solyc04g008090.2 N 0.000
TCM_011266 Theobroma cacao TCM_011266 I 0.000
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.000
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N 0.000