GG10435 (Drosophila erecta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 FBgn0102744 T318588_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.685 0.519
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.685 0.519
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.685 0.519
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.685 0.519
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.672 0.468
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.672 0.468
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.672 0.468
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.672 0.468
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.672 0.468
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.672 0.468
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.672 0.468
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.672 0.468
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.672 0.468
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.672 0.468
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.672 0.468
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.672 0.468
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.672 0.468
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.672 0.468
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.672 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0128981 RFX 305 383

Links

Other RFX family TFs
Other Drosophila erecta TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007290 Ailuropoda melanoleuca ENSAMEG00000007290 N 0.000
ENSBTAP00000001994-D1 Bos grunniens ENSBTAP00000001994-D1 N 0.000
ENSCSAG00000012442 Chlorocebus sabaeus ENSCSAG00000012442 N 0.000
ENSMPUG00000008759 Mustela putorius furo ENSMPUG00000008759 N 0.000
ENSNLEG00000003582 Nomascus leucogenys ENSNLEG00000003582 N 0.000
ENSOARG00000005313 Ovis aries ENSOARG00000005313 N 0.000
ENSP00000287025 Macaca fascicularis ENSP00000287025 N 0.000
ENSPANG00000000418 Papio anubis ENSPANG00000000418 N 0.000
ENSPPYG00000018764 Pongo abelii ENSPPYG00000018764 N 0.000
ENSSHAG00000005026 Sarcophilus harrisii ENSSHAG00000005026 N 0.000
ENSSTOG00000008021 Ictidomys tridecemlineatus ENSSTOG00000008021 N 0.000
MTERF3 Tursiops truncatus ENSTTRG00000007349 N 0.000
MTERF3 Vicugna pacos ENSVPAG00000004132 N 0.000
MTERF3 Tupaia belangeri ENSTBEG00000002615 N 0.000
MTERF3 Sus scrofa ENSSSCG00000006090 N 0.000
MTERF3 Pan troglodytes ENSPTRG00000020441 N 0.000
MTERF3 Procavia capensis ENSPCAG00000009302 N 0.000
MTERF3 Otolemur garnettii ENSOGAG00000004303 N 0.000
MTERF3 Oryctolagus cuniculus ENSOCUG00000004276 N 0.000
MTERF3 Bos taurus ENSBTAG00000001522 N 0.000
Mterf3 Mus musculus ENSMUSG00000021519 N 0.000
MTERF3 Macaca mulatta ENSMMUG00000008808 N 0.000
MTERF3 Myotis lucifugus ENSMLUG00000007186 N 0.000
MTERF3 Loxodonta africana ENSLAFG00000002544 N 0.000
MTERF3 Gorilla gorilla ENSGGOG00000011535 N 0.000
MTERF3 Homo sapiens ENSG00000156469 N 0.000
MTERF3 Felis catus ENSFCAG00000028511 N 0.000
MTERF3 Echinops telfairi ENSETEG00000011372 N 0.000
MTERF3 Equus caballus ENSECAG00000012943 N 0.000
Mterf3 Dipodomys ordii ENSDORG00000010477 N 0.000
MTERF3 Dasypus novemcinctus ENSDNOG00000041739 N 0.000
MTERF3 Cavia porcellus ENSCPOG00000003487 N 0.000
MTERF3 Callithrix jacchus ENSCJAG00000020561 N 0.000
MTERF3 Choloepus hoffmanni ENSCHOG00000007893 N 0.000
MTERF3 Canis familiaris ENSCAFG00000009460 N 0.000
Myotis_brandtii_MTERFD1_10032119 Myotis brandtii Myotis_brandtii_MTERFD1_10032119 N 0.000