HMPREF1541_04667 (Cyphellophora europaea)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 HMPREF1541_04667 T318644_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.673 0.487
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.673 0.487
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.673 0.487
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.673 0.487
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.673 0.487
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ETN40390 RFX 217 294

Links

Other RFX family TFs
Other Cyphellophora europaea TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27751.m000169 Ricinus communis 27751.m000169 N 0.000
BHLH039 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001751 N 0.000
Bo01495s010 Brassica oleracea Bo01495s010 N 0.000
Bo4g112570 Brassica oleracea Bo4g112570 N 0.000
Bo4g112590 Brassica oleracea Bo4g112590 N 0.000
Bo6g072500 Brassica oleracea Bo6g072500 N 0.000
Bo6g072510 Brassica oleracea Bo6g072510 N 0.000
Bostr.20505s0056 Boechera stricta Bostr.20505s0056 N 0.000
Bra003260 Brassica rapa Bra003260 N 0.000
Bra003261 Brassica rapa Bra003261 N 0.000
Bra014654 Brassica rapa Bra014654 N 0.000
Bra014657 Brassica rapa Bra014657 N 0.000
Bra014658 Brassica rapa Bra014658 N 0.000
Cagra.0578s0027 Capsella grandiflora Cagra.0578s0027 N 0.000
Cagra.0578s0028 Capsella grandiflora Cagra.0578s0028 N 0.000
Carubv10017770m.g Capsella rubella Carubv10017770m.g N 0.000
Carubv10019130m.g Capsella rubella Carubv10019130m.g N 0.000
Ciclev10006413m.g Citrus clementina Ciclev10006413m.g N 0.000
Cla001676 Citrullus lanatus Cla001676 N 0.000
Cucsa.371810 Cucumis sativus Cucsa.371810 N 0.000
gene27422-v1.0-hybrid Fragaria vesca gene27422-v1.0-hybrid N 0.000
GLYMA03G28630 Glycine max GLYMA03G28630 N 0.000
GLYMA19G31361 Glycine max GLYMA19G31361 N 0.000
MDP0000641681 Malus domestica MDP0000641681 N 0.000
MTR_1g048720 Medicago truncatula MTR_1g048720 N 0.000
orange1.1g025477m.g Citrus sinensis orange1.1g025477m.g N 0.000
ORG2 Arabidopsis thaliana AT3G56970 N 0.000
ORG3 Arabidopsis thaliana AT3G56980 N 0.000
Pm028948 Prunus mume Pm028948 N 0.000
Pm028949 Prunus mume Pm028949 N 0.000
Pm031098 Prunus mume Pm031098 N 0.000
Pm031103 Prunus mume Pm031103 N 0.000
POPTR_0006s03560 Populus trichocarpa POPTR_0006s03560 N 0.000
POPTR_0006s03590 Populus trichocarpa POPTR_0006s03590 N 0.000
POPTR_0016s03680 Populus trichocarpa POPTR_0016s03680 N 0.000
PRUPE_ppa018670mg Prunus persica PRUPE_ppa018670mg N 0.000
PRUPE_ppa024966mg Prunus persica PRUPE_ppa024966mg N 0.000
SapurV1A.0159s0010 Salix purpurea SapurV1A.0159s0010 N 0.000
SapurV1A.0196s0420 Salix purpurea SapurV1A.0196s0420 N 0.000
SapurV1A.0196s0430 Salix purpurea SapurV1A.0196s0430 N 0.000
TCM_024315 Theobroma cacao TCM_024315 N 0.000
Thhalv10006189m.g Eutrema salsugineum Thhalv10006189m.g N 0.000
Thhalv10006191m.g Eutrema salsugineum Thhalv10006191m.g N 0.000
Thhalv10006491m.g Eutrema salsugineum Thhalv10006491m.g N 0.000
VIT_08s0007g05300 Vitis vinifera VIT_08s0007g05300 N 0.000