VDAG_01397 (Verticillium dahliae)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 VDAG_01397 T318848_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.673 0.500
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.673 0.500
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.673 0.500
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.673 0.500
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.673 0.500
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.658 0.462
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.652 0.397
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.652 0.397
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.651 0.397
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.651 0.397
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.651 0.385
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.651 0.385
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.651 0.385
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.651 0.410
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EGY17715 RFX 191 268

Links

Other RFX family TFs
Other Verticillium dahliae TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008803 Ricinus communis 30174.m008803 I 0.000
30190.m011329 Ricinus communis 30190.m011329 I 0.000
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.000
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.000
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.000
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.000
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.000
Bo5g001290 Brassica oleracea Bo5g001290 I 0.000
Bo8g118210 Brassica oleracea Bo8g118210 I 0.000
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.000
Bra032662 Brassica rapa Bra032662 I 0.000
Bra033221 Brassica rapa Bra033221 I 0.000
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.000
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.000
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.000
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.000
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.000
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.000
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.000
Ca_18942 Cicer arietinum Ca_18942 I 0.000
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.000
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.000
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.000
Cla006776 Citrullus lanatus Cla006776 I 0.000
Cla020006 Citrullus lanatus Cla020006 I 0.000
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.000
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.000
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.000
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.000
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.000
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.000
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.000
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.000
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.000
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.000
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.000
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.000
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.000
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.000
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.000
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.000
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.000
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.000
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.000
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.000
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.000
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.000
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.000
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.000
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.000
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.000
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.000
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.000
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.000
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.000
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.000
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.000
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.000
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.000
MDP0000803116 Malus domestica MDP0000803116 I 0.000
mgf011616m Mimulus guttatus mgf011616m I 0.000
mgf016085m Mimulus guttatus mgf016085m I 0.000
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.000
MLOC_326 Hordeum vulgare MLOC_326 I 0.000
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.000
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.000
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.000
OB02G15090 Oryza brachyantha OB02G15090 I 0.000
OB04G34990 Oryza brachyantha OB04G34990 I 0.000
OB06G31100 Oryza brachyantha OB06G31100 I 0.000
OBART04G27990 Oryza barthii OBART04G27990 I 0.000
OBART06G23500 Oryza barthii OBART06G23500 I 0.000
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.000
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.000
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.000
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.000
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.000
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.000
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.000
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.000
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.000
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.000
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.000
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.000
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.000
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.000
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.000
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.000
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.000
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.000
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.000
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.000
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.000
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.000
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.000
PK25779.1 Cannabis sativa PK25779.1 I 0.000
Pm017777 Prunus mume Pm017777 I 0.000
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.000
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.000
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.000
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.000
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.000
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.000
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.000
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.000
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.000
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.000
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.000
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.000
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.000
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.000
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.000
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.000
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.000
Si006559m.g Setaria italica Si006559m.g I 0.000
Si017338m.g Setaria italica Si017338m.g I 0.000
Si022315m.g Setaria italica Si022315m.g I 0.000
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.000
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.000
SPL10 Oryza indica BGIOSGA023408 I 0.000
SPL10 Oryza sativa OS06G0659100 I 0.000
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.000
SPL5 Oryza sativa OS02G0177300 I 0.000
SPL8 Arabidopsis thaliana AT1G02065 D 0.000
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.000
SPL8 Oryza sativa OS04G0656500 I 0.000
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.000
TCM_005622 Theobroma cacao TCM_005622 I 0.000
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.000
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.000
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.000
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.000
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.000
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.000
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.000
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.000