Pvit_04986 (Pogona vitticeps)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Pvit_04986 T319015_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.745 0.772
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.745 0.772
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.745 0.772
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.745 0.772
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.745 0.772
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.745 0.772
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.745 0.772
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.745 0.772
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.745 0.772
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.745 0.772
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.745 0.772
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.745 0.772
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.745 0.772
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.745 0.772
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.745 0.772
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.708 0.671
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.708 0.671
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.708 0.671
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.708 0.671
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_04986 RFX 92 170

Links

Other RFX family TFs
Other Pogona vitticeps TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29646.m001068 Ricinus communis 29646.m001068 I 0.000
30174.m008698 Ricinus communis 30174.m008698 I 0.000
AMTR_s00048p00108400 Amborella trichopoda AMTR_s00048p00108400 I 0.000
Aquca_013_00209 Aquilegia coerulea Aquca_013_00209 I 0.000
Aquca_037_00034 Aquilegia coerulea Aquca_037_00034 I 0.000
BGIOSGA001085 Oryza indica BGIOSGA001085 I 0.000
BGIOSGA020389 Oryza indica BGIOSGA020389 I 0.000
BGIOSGA025382 Oryza indica BGIOSGA025382 I 0.000
Bo1g005460 Brassica oleracea Bo1g005460 I 0.000
Bo3g039150 Brassica oleracea Bo3g039150 I 0.000
Bo4g010410 Brassica oleracea Bo4g010410 I 0.000
Bo4g038560 Brassica oleracea Bo4g038560 I 0.000
Bo9g003700 Brassica oleracea Bo9g003700 I 0.000
Bostr.7365s0064 Boechera stricta Bostr.7365s0064 I 0.000
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I 0.000
Bra004550 Brassica rapa Bra004550 I 0.000
Bra010572 Brassica rapa Bra010572 I 0.000
Bra011701 Brassica rapa Bra011701 I 0.000
Bra037382 Brassica rapa Bra037382 I 0.000
BRADI1G54180 Brachypodium distachyon BRADI1G54180 I 0.000
BRADI2G15940 Brachypodium distachyon BRADI2G15940 I 0.000
BRADI2G45567 Brachypodium distachyon BRADI2G45567 I 0.000
Cagra.0050s0071 Capsella grandiflora Cagra.0050s0071 I 0.000
Cagra.1372s0011 Capsella grandiflora Cagra.1372s0011 I 0.000
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I 0.000
Carubv10001247m.g Capsella rubella Carubv10001247m.g I 0.000
Carubv10005287m.g Capsella rubella Carubv10005287m.g I 0.000
Carubv10023434m.g Capsella rubella Carubv10023434m.g I 0.000
cassava29861.valid.m1 Manihot esculenta cassava29861.valid.m1 I 0.000
cassava29862.valid.m1 Manihot esculenta cassava29862.valid.m1 I 0.000
cassava43569.valid.m1 Manihot esculenta cassava43569.valid.m1 I 0.000
cassava43570.valid.m1 Manihot esculenta cassava43570.valid.m1 I 0.000
cassava43571.valid.m1 Manihot esculenta cassava43571.valid.m1 I 0.000
cassava45491.m1 Manihot esculenta cassava45491.m1 I 0.000
cassava46468.m1 Manihot esculenta cassava46468.m1 I 0.000
Ca_01293 Cicer arietinum Ca_01293 I 0.000
Ca_17787 Cicer arietinum Ca_17787 I 0.000
chr1.CM0579.280.nd Lotus japonicus chr1.CM0579.280.nd I 0.000
Ciclev10020314m.g Citrus clementina Ciclev10020314m.g I 0.000
Cla021500 Citrullus lanatus Cla021500 I 0.000
CPRF1_PETCR Petroselinum crispum CPRF1_PETCR D 0.000
Cucsa.258940 Cucumis sativus Cucsa.258940 I 0.000
estExt_fgenesh1_pg.C_10522 Micromonas pusilla estExt_fgenesh1_pg.C_10522 I 0.000
estExt_fgenesh2_pg.C_Chr_020452 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_020452 I 0.000
Eucgr.E00078 Eucalyptus grandis Eucgr.E00078 I 0.000
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I 0.000
F775_07803 Aegilops tauschii F775_07803 I 0.000
GBF1 Arabidopsis thaliana AT4G36730 D 0.000
GBF1 Arabidopsis lyrata scaffold_700433.1 I 0.000
GBF1 Vitis vinifera VIT_04s0023g01360 I 0.000
GBF2 Arabidopsis lyrata Al_scaffold_0006_3899 I 0.000
GBF2 Arabidopsis thaliana AT4G01120 D 0.000
GBF3 Arabidopsis thaliana AT2G46270 D 0.000
GBF3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002338 I 0.000
gene18928-v1.0-hybrid Fragaria vesca gene18928-v1.0-hybrid I 0.000
gene29546-v1.0-hybrid Fragaria vesca gene29546-v1.0-hybrid I 0.000
gene32022-v1.0-hybrid Fragaria vesca gene32022-v1.0-hybrid I 0.000
GLYMA03G41590 Glycine max GLYMA03G41590 I 0.000
GLYMA07G06620 Glycine max GLYMA07G06620 I 0.000
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.000
GLYMA16G03190 Glycine max GLYMA16G03190 I 0.000
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.000
GLYMA19G44190 Glycine max GLYMA19G44190 I 0.000
Gorai.004G153100 Gossypium raimondii Gorai.004G153100 I 0.000
Gorai.007G105100 Gossypium raimondii Gorai.007G105100 I 0.000
Gorai.008G123200 Gossypium raimondii Gorai.008G123200 I 0.000
GRMZM2G011932 Zea mays GRMZM2G011932 I 0.000
GRMZM2G095078 Zea mays GRMZM2G095078 I 0.000
GRMZM2G117851 Zea mays GRMZM2G117851 I 0.000
GRMZM2G160136 Zea mays GRMZM2G160136 I 0.000
GRMZM2G171370 Zea mays GRMZM2G171370 I 0.000
GRMZM2G358701 Zea mays GRMZM2G358701 I 0.000
GRMZM5G848942 Zea mays GRMZM5G848942 I 0.000
GSMUA_Achr1G05050_001 Musa acuminata GSMUA_Achr1G05050_001 I 0.000
GSMUA_Achr5G14150_001 Musa acuminata GSMUA_Achr5G14150_001 I 0.000
GSMUA_Achr6G32000_001 Musa acuminata GSMUA_Achr6G32000_001 I 0.000
GSMUA_Achr9G05310_001 Musa acuminata GSMUA_Achr9G05310_001 I 0.000
gw1.27.125.1 Physcomitrella patens gw1.27.125.1 I 0.000
gw1.3.298.1 Physcomitrella patens gw1.3.298.1 I 0.000
gw1.33.173.1 Physcomitrella patens gw1.33.173.1 I 0.000
gw2.11.550.1 Micromonas sp RCC299 gw2.11.550.1 I 0.000
LPERR01G21580 Leersia perrieri LPERR01G21580 I 0.000
LPERR05G21930 Leersia perrieri LPERR05G21930 I 0.000
LPERR07G06120 Leersia perrieri LPERR07G06120 I 0.000
Lus10003034.g Linum usitatissimum Lus10003034.g I 0.000
Lus10005146.g Linum usitatissimum Lus10005146.g I 0.000
MDP0000138052 Malus domestica MDP0000138052 I 0.000
MDP0000231274 Malus domestica MDP0000231274 I 0.000
MDP0000239688 Malus domestica MDP0000239688 I 0.000
MDP0000493795 Malus domestica MDP0000493795 I 0.000
MDP0000545420 Malus domestica MDP0000545420 I 0.000
mgf003302m Mimulus guttatus mgf003302m I 0.000
mgf013423m Mimulus guttatus mgf013423m I 0.000
MLOC_6711 Hordeum vulgare MLOC_6711 I 0.000
MTR_7g116890 Medicago truncatula MTR_7g116890 I 0.000
MTR_8g070820 Medicago truncatula MTR_8g070820 I 0.000
OB01G34490 Oryza brachyantha OB01G34490 I 0.000
OB05G33790 Oryza brachyantha OB05G33790 I 0.000
OB07G15280 Oryza brachyantha OB07G15280 I 0.000
OBART01G25300 Oryza barthii OBART01G25300 I 0.000
OBART05G26280 Oryza barthii OBART05G26280 I 0.000
OBART07G07070 Oryza barthii OBART07G07070 I 0.000
OGLUM01G29060 Oryza glumaepatula OGLUM01G29060 I 0.000
OGLUM05G27920 Oryza glumaepatula OGLUM05G27920 I 0.000
OGLUM07G06770 Oryza glumaepatula OGLUM07G06770 I 0.000
OLONG_003667 Oryza longistaminata OLONG_003667 I 0.000
OLONG_021599 Oryza longistaminata OLONG_021599 I 0.000
OLONG_022047 Oryza longistaminata OLONG_022047 I 0.000
OMERI01G23000 Oryza meridionalis OMERI01G23000 I 0.000
OMERI03G30340 Oryza meridionalis OMERI03G30340 I 0.000
OMERI07G05820 Oryza meridionalis OMERI07G05820 I 0.000
ONIVA01G28540 Oryza nivara ONIVA01G28540 I 0.000
ONIVA05G28290 Oryza nivara ONIVA05G28290 I 0.000
ONIVA07G05320 Oryza nivara ONIVA07G05320 I 0.000
OPUNC01G25140 Oryza punctata OPUNC01G25140 I 0.000
OPUNC02G01690 Oryza punctata OPUNC02G01690 I 0.000
OPUNC05G23850 Oryza punctata OPUNC05G23850 I 0.000
OPUNC07G06790 Oryza punctata OPUNC07G06790 I 0.000
orange1.1g014660m.g Citrus sinensis orange1.1g014660m.g I 0.000
ORGLA01G0206000 Oryza glaberrima ORGLA01G0206000 I 0.000
ORGLA05G0227800 Oryza glaberrima ORGLA05G0227800 I 0.000
ORUFI01G28110 Oryza rufipogon ORUFI01G28110 I 0.000
ORUFI05G28170 Oryza rufipogon ORUFI05G28170 I 0.000
ORUFI07G07050 Oryza rufipogon ORUFI07G07050 I 0.000
OS01G0658900 Oryza sativa OS01G0658900 I 0.000
OS05G0569300 Oryza sativa OS05G0569300 I 0.000
OS07G0209800 Oryza sativa OS07G0209800 I 0.000
Pavir.Ba03287 Panicum virgatum Pavir.Ba03287 I 0.000
Pavir.Bb00931 Panicum virgatum Pavir.Bb00931 I 0.000
Pavir.Ca00968 Panicum virgatum Pavir.Ca00968 I 0.000
Pavir.Ea02315 Panicum virgatum Pavir.Ea02315 I 0.000
Pavir.J01411 Panicum virgatum Pavir.J01411 I 0.000
PDK_20s1310372g001 Phoenix dactylifera PDK_20s1310372g001 I 0.000
PDK_20s1349941g001 Phoenix dactylifera PDK_20s1349941g001 I 0.000
PGSC0003DMG400000088 Solanum tuberosum PGSC0003DMG400000088 I 0.000
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I 0.000
PGSC0003DMG400033876 Solanum tuberosum PGSC0003DMG400033876 I 0.000
PK07494.1 Cannabis sativa PK07494.1 I 0.000
PK09653.1 Cannabis sativa PK09653.1 D 0.000
Pm018422 Prunus mume Pm018422 I 0.000
Pm024103 Prunus mume Pm024103 I 0.000
POPTR_0002s16870 Populus trichocarpa POPTR_0002s16870 I 0.000
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I 0.000
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I 0.000
POPTR_0014s08990 Populus trichocarpa POPTR_0014s08990 I 0.000
PRUPE_ppa006173mg Prunus persica PRUPE_ppa006173mg I 0.000
PRUPE_ppa020524mg Prunus persica PRUPE_ppa020524mg I 0.000
Q40645_ORYSA Oryza sativa Q40645_ORYSA D 0.000
Q41109_PHAVU Phaseolus vulgaris Q41109_PHAVU D 0.000
SapurV1A.0013s0770 Salix purpurea SapurV1A.0013s0770 I 0.000
Sb02g006350 Sorghum bicolor Sb02g006350 I 0.000
Sb03g030050 Sorghum bicolor Sb03g030050 I 0.000
Sb09g028990 Sorghum bicolor Sb09g028990 I 0.000
SELMODRAFT_125734 Selaginella moellendorffii SELMODRAFT_125734 I 0.000
SELMODRAFT_129391 Selaginella moellendorffii SELMODRAFT_129391 I 0.000
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I 0.000
Si001929m.g Setaria italica Si001929m.g I 0.000
Si022388m.g Setaria italica Si022388m.g I 0.000
Si030123m.g Setaria italica Si030123m.g I 0.000
Si039367m.g Setaria italica Si039367m.g I 0.000
Solyc01g095460.2 Solanum lycopersicum Solyc01g095460.2 I 0.000
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I 0.000
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I 0.000
Solyc05g050220.2 Solanum lycopersicum Solyc05g050220.2 I 0.000
TAF1_TOBAC Nicotiana tabacum TAF1_TOBAC D 0.000
TCM_005210 Theobroma cacao TCM_005210 I 0.000
Thhalv10001533m.g Eutrema salsugineum Thhalv10001533m.g I 0.000
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I 0.000
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I 0.000
Thhalv10028761m.g Eutrema salsugineum Thhalv10028761m.g I 0.000
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I 0.000
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I 0.000
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I 0.000
Traes_2BL_245DDBC7B Triticum aestivum Traes_2BL_245DDBC7B I 0.000
TRIUR3_18341 Triticum urartu TRIUR3_18341 I 0.000
TRIUR3_31142 Triticum urartu TRIUR3_31142 I 0.000
VIT_02s0025g01020 Vitis vinifera VIT_02s0025g01020 I 0.000
VIT_15s0046g01440 Vitis vinifera VIT_15s0046g01440 I 0.000
VIT_18s0001g12120 Vitis vinifera VIT_18s0001g12120 I 0.000