A_01977 (Schistosoma haematobium)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 A_01977 T319152_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.707 0.557
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.707 0.557
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.707 0.557
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.707 0.557
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.700 0.557
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.700 0.557
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.700 0.557
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.700 0.557
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.700 0.557
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.700 0.557
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.700 0.557
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.700 0.557
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.700 0.557
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.700 0.557
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.700 0.557
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.700 0.557
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.700 0.557
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.700 0.557
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.700 0.557
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
A_01977 RFX 112 190

Links

Other RFX family TFs
Other Schistosoma haematobium TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
14959_Multiple Saccharomyces mikatae 14959_Multiple I 0.000
16177_Multiple Saccharomyces paradoxus 16177_Multiple I 0.000
A1Q1_00828 Trichosporon asahii A1Q1_00828 I 0.000
AACERI_AaceriAAL010W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL010W I 0.000
ACRE_029400 Acremonium chrysogenum ACRE_029400 I 0.000
AGABI2DRAFT_184602 Agaricus bisporus AGABI2DRAFT_184602 I 0.000
AGOS_AAL010W Ashbya gossypii AGOS_AAL010W I 0.000
ALUE_0001355401 Ascaris lumbricoides ALUE_0001355401 I 0.000
ASU_01592 Ascaris suum ASU_01592 I 0.000
BAUCODRAFT_23427 Baudoinia compniacensis BAUCODRAFT_23427 I 0.000
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.000
Bm3804 Brugia malayi Bm3804 I 0.000
BN946_scf184858.g55 Trametes cinnabarina BN946_scf184858.g55 I 0.000
BOTBODRAFT_100719 Botryobasidium botryosum BOTBODRAFT_100719 N 0.000
BXY_1592600 Bursaphelenchus xylophilus BXY_1592600 I 0.000
CAGL0B04895g Candida glabrata CAGL0B04895g I 0.000
CAGL0H03751g Candida glabrata CAGL0H03751g I 0.000
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.651
CC1G_00311 Coprinopsis cinerea CC1G_00311 I 0.000
CY34DRAFT_103779 Suillus luteus CY34DRAFT_103779 I 0.000
DACRYDRAFT_45233 Dacryopinax sp DACRYDRAFT_45233 I 0.000
DICSQDRAFT_106385 Dichomitus squalens DICSQDRAFT_106385 I 0.000
DOTSEDRAFT_132769 Dothistroma septosporum DOTSEDRAFT_132769 I 0.000
E5Q_03025 Mixia osmundae E5Q_03025 I 0.000
E5Q_03026 Mixia osmundae E5Q_03026 I 0.000
EEL_0000135001 Elaeophora elaphi EEL_0000135001 I 0.000
estExt_fgenesh1_pg.C_chr_80140 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_80140 I 0.000
estExt_fgenesh2_pg.C_4710022 Branchiostoma floridae estExt_fgenesh2_pg.C_4710022 I 0.000
estExt_genewise1_worm.C_chr_6.10133 Pichia stipitis estExt_genewise1_worm.C_chr_6.10133 I 0.000
EuGene4000430 Heterobasidion annosum EuGene4000430 I 0.000
EVEC_0001085201 Enterobius vermicularis EVEC_0001085201 I 0.000
fgenesh1_pg.C_scaffold_2000774 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_2000774 I 0.000
fgeneshTM_pg.2_#_559 Tremella mesenterica fgeneshTM_pg.2_#_559 I 0.000
FIBRA_04592 Fibroporia radiculosa FIBRA_04592 I 0.000
FOMPIDRAFT_1038544 Fomitopsis pinicola FOMPIDRAFT_1038544 I 0.000
GALMADRAFT_236082 Galerina marginata GALMADRAFT_236082 I 0.000
GLOTRDRAFT_32962 Gloeophyllum trabeum GLOTRDRAFT_32962 I 0.000
GNLVRS01_PISO0E08012g Millerozyma farinosa GNLVRS01_PISO0E08012g I 0.000
GNLVRS01_PISO0F09355g Millerozyma farinosa GNLVRS01_PISO0F09355g I 0.000
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.000
GSTUM_00005211001 Tuber melanosporum GSTUM_00005211001 I 0.000
gw1.15.255.1 Mycosphaerella fijiensis gw1.15.255.1 I 0.000
HCBG_05483 Histoplasma capsulatum HCBG_05483 I 0.000
HelroG82191 Helobdella robusta HelroG82191 I 0.000
HETIRDRAFT_170415 Heterobasidion irregulare HETIRDRAFT_170415 I 0.000
JAAARDRAFT_166855 Jaapia argillacea JAAARDRAFT_166855 I 0.000
K443DRAFT_673983 Laccaria amethystina K443DRAFT_673983 I 0.000
KAFR_0I02180 Kazachstania africana KAFR_0I02180 I 0.000
LACBIDRAFT_311799 Laccaria bicolor LACBIDRAFT_311799 I 0.000
LOAG_17230 Loa loa LOAG_17230 I 0.000
M378DRAFT_67300 Amanita muscaria M378DRAFT_67300 I 0.000
M404DRAFT_124798 Pisolithus tinctorius M404DRAFT_124798 I 0.000
M407DRAFT_70388 Tulasnella calospora M407DRAFT_70388 I 0.000
M408DRAFT_113587 Serendipita vermifera M408DRAFT_113587 N 0.000
M413DRAFT_306124 Hebeloma cylindrosporum M413DRAFT_306124 I 0.000
ML02801a Mnemiopsis leidyi ML02801a I 0.000
Moror_7356 Moniliophthora roreri Moror_7356 N 0.000
MVLG_04348 Microbotryum violaceum MVLG_04348 I 0.000
MYCFIDRAFT_10959 Pseudocercospora fijiensis MYCFIDRAFT_10959 I 0.000
Mycgr3G110369 Zymoseptoria tritici Mycgr3G110369 I 0.000
nAv.1.0.1.g06901 Acanthocheilonema viteae nAv.1.0.1.g06901 I 0.000
nDi.2.2.2.g03767 Dirofilaria immitis nDi.2.2.2.g03767 I 0.000
NEPG_00460 Nematocida parisii ertm1 NEPG_00460 I 0.000
NERG_01713 Nematocida sp NERG_01713 I 0.000
nLs.2.1.2.g03959 Litomosoides sigmodontis nLs.2.1.2.g03959 I 0.000
nOo.2.0.1.g04858 Onchocerca ochengi nOo.2.0.1.g04858 I 0.000
O9G_004738 Rozella allomycis O9G_004738 I 0.000
OFLC_0000277501 Onchocerca flexuosa OFLC_0000277501 I 0.000
PAAG_00480 Paracoccidioides sp lutzii PAAG_00480 I 0.000
PABG_06744 Paracoccidioides brasiliensis PABG_06744 I 0.000
PaG_06171 Pseudozyma aphidis PaG_06171 N 0.000
PAN0_021d6025 Pseudozyma antarctica PAN0_021d6025 N 0.000
PAS_chr2-2_0153 Komagataella pastoris PAS_chr2-2_0153 I 0.000
PAXRUDRAFT_31952 Paxillus rubicundulus PAXRUDRAFT_31952 I 0.000
PGTG_11391 Puccinia graminis PGTG_11391 I 0.000
PHACADRAFT_25186 Phanerochaete carnosa PHACADRAFT_25186 I 0.000
PHLGIDRAFT_115381 Phlebiopsis gigantea PHLGIDRAFT_115381 I 0.000
PHSY_002871 Pseudozyma hubeiensis PHSY_002871 N 0.000
PICST_78645 Scheffersomyces stipitis PICST_78645 I 0.000
PIIN_08876 Piriformospora indica PIIN_08876 N 0.000
PILCRDRAFT_94503 Piloderma croceum PILCRDRAFT_94503 I 0.000
PISMIDRAFT_670796 Pisolithus microcarpus PISMIDRAFT_670796 I 0.000
PLEOSDRAFT_1038101 Pleurotus ostreatus PLEOSDRAFT_1038101 I 0.000
PMAA_084960 Talaromyces marneffei PMAA_084960 I 0.000
PMAA_084960 Penicillium marneffei PMAA_084960 I 0.000
PNEG_02893 Pneumocystis murina PNEG_02893 I 0.000
PredSwiss_ASS2010_3110.1 Pneumocystis carinii PredSwiss_ASS2010_3110.1 I 0.000
PredSwiss_CON653.4 Pneumocystis carinii PredSwiss_CON653.4 I 0.000
PTSG_10225 Salpingoeca rosetta PTSG_10225 I 0.000
PTTG_01668 Puccinia triticina PTTG_01668 I 0.000
PVAR5_6603 Byssochlamys spectabilis PVAR5_6603 I 0.000
RFX1 Saccharomyces cerevisiae YLR176C D 0.000
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.655
SAKL0D08734g Lachancea kluyveri SAKL0D08734g I 0.000
scaffold324-EXSNAP2012.23 Pristionchus exspectatus scaffold324-EXSNAP2012.23 I 0.000
SCHCODRAFT_71685 Schizophyllum commune SCHCODRAFT_71685 I 0.000
SCLCIDRAFT_138144 Scleroderma citrinum SCLCIDRAFT_138144 I 0.000
SEPMUDRAFT_46603 Sphaerulina musiva SEPMUDRAFT_46603 I 0.000
SERLA73DRAFT_85891 Serpula lacrymans SERLA73DRAFT_85891 I 0.000
SJAG_04839 Schizosaccharomyces japonicus SJAG_04839 I 0.000
SMUV_0001085601 Syphacia muris SMUV_0001085601 I 0.000
SOCG_01623 Schizosaccharomyces octosporus SOCG_01623 I 0.000
SPAPADRAFT_70246 Spathaspora passalidarum SPAPADRAFT_70246 I 0.000
SPOG_03909 Schizosaccharomyces cryophilus SPOG_03909 I 0.000
SPPG_01648 Spizellomyces punctatus SPPG_01648 I 0.000
sr13205 Sporisorium reilianum sr13205 N 0.000
TCNE_0001843801 Toxocara canis TCNE_0001843801 I 0.000
tetur19g03130 Tetranychus urticae tetur19g03130 I 0.000
TSTA_119980 Talaromyces stipitatus TSTA_119980 I 0.000
UHOR_03310 Ustilago hordei UHOR_03310 N 0.000
UM06308 Ustilago maydis UM06308 N 0.000
V565_046180 Rhizoctonia solani V565_046180 N 0.000
WBGene00247845 Onchocerca volvulus WBGene00247845 I 0.000
WUBG_07284 Wuchereria bancrofti WUBG_07284 I 0.000
XP_002492053.1 Pichia pastoris XP_002492053.1 I 0.000
YALI0_E13596g Yarrowia lipolytica YALI0_E13596g I 0.000
ZBAI_03427 Zygosaccharomyces bailii ZBAI_03427 I 0.000
ZBAI_08430 Zygosaccharomyces bailii ZBAI_08430 I 0.000
ZYRO0E04642g Zygosaccharomyces rouxii ZYRO0E04642g I 0.000