ENSLACG00000013776 (Latimeria chalumnae)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSLACG00000013776 T319400_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.937 0.937
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.937 0.937
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.937 0.937
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.937 0.937
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.937 0.937
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.937 0.937
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.937 0.937
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.937 0.937
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.937 0.937
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.937 0.937
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.937 0.937
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.937 0.937
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.913 0.913
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.913 0.913
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.913 0.913
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.913 0.913
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.913 0.913
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.913 0.913
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.913 0.913
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.913 0.913
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.913 0.913
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.913 0.913
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.913 0.913
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.913 0.913
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.913 0.913
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.913 0.913
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.913 0.913
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.913 0.913
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.913 0.913
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.913 0.913
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.913 0.913
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.913 0.913
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.913 0.913
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.913 0.913
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.913 0.913
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.913 0.913
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.748 0.748
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.748 0.748
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.748 0.748
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.748 0.748
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000015649 Runt 53 179

Links

Other Runt family TFs
Other Latimeria chalumnae TFs

369 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
anac095 Arabidopsis thaliana AT5G41090 N
Aquca_003_00875 Aquilegia coerulea Aquca_003_00875 N
BGIOSGA025747 Oryza indica BGIOSGA025747 N
BGIOSGA029063 Oryza indica BGIOSGA029063 N
BGIOSGA031062 Oryza indica BGIOSGA031062 N
BGIOSGA037778 Oryza indica BGIOSGA037778 N
BRADI3G41470 Brachypodium distachyon BRADI3G41470 N
BRADI4G02060 Brachypodium distachyon BRADI4G02060 N
BRADI4G34800 Brachypodium distachyon BRADI4G34800 N
Ca_22941 Cicer arietinum Ca_22941 N
Cla000384 Citrullus lanatus Cla000384 N
Cucsa.087480 Cucumis sativus Cucsa.087480 N
Eucgr.K02205 Eucalyptus grandis Eucgr.K02205 N
F775_31820 Aegilops tauschii F775_31820 N
GRMZM2G054252 Zea mays GRMZM2G054252 N
GRMZM2G054277 Zea mays GRMZM2G054277 N
GRMZM2G100583 Zea mays GRMZM2G100583 N
GRMZM2G114850 Zea mays GRMZM2G114850 N
GRMZM2G179049 Zea mays GRMZM2G179049 N
LPERR08G18520 Leersia perrieri LPERR08G18520 N
LPERR09G12100 Leersia perrieri LPERR09G12100 N
LPERR12G15510 Leersia perrieri LPERR12G15510 N
Lus10012927.g Linum usitatissimum Lus10012927.g N
Lus10034999.g Linum usitatissimum Lus10034999.g N
mgf006124m Mimulus guttatus mgf006124m N
mgf019352m Mimulus guttatus mgf019352m N
MLOC_64240 Hordeum vulgare MLOC_64240 N
OB09G22520 Oryza brachyantha OB09G22520 N
OB12G25170 Oryza brachyantha OB12G25170 N
OBART08G21800 Oryza barthii OBART08G21800 N
OBART09G15890 Oryza barthii OBART09G15890 N
OBART12G18490 Oryza barthii OBART12G18490 N
OGLUM07G14740 Oryza glumaepatula OGLUM07G14740 N
OGLUM08G23090 Oryza glumaepatula OGLUM08G23090 N
OGLUM09G16460 Oryza glumaepatula OGLUM09G16460 N
OGLUM12G20140 Oryza glumaepatula OGLUM12G20140 N
OLONG_020119 Oryza longistaminata OLONG_020119 N
OMERI06G13840 Oryza meridionalis OMERI06G13840 N
OMERI07G09680 Oryza meridionalis OMERI07G09680 N
OMERI07G11790 Oryza meridionalis OMERI07G11790 N
OMERI09G11810 Oryza meridionalis OMERI09G11810 N
OMERI12G13180 Oryza meridionalis OMERI12G13180 N
ONIVA07G09980 Oryza nivara ONIVA07G09980 N
ONIVA07G13650 Oryza nivara ONIVA07G13650 N
ONIVA08G24840 Oryza nivara ONIVA08G24840 N
ONIVA09G17010 Oryza nivara ONIVA09G17010 N
ONIVA12G17390 Oryza nivara ONIVA12G17390 N
OPUNC08G19870 Oryza punctata OPUNC08G19870 N
OPUNC09G14320 Oryza punctata OPUNC09G14320 N
OPUNC12G16690 Oryza punctata OPUNC12G16690 N
ORGLA07G0123600 Oryza glaberrima ORGLA07G0123600 N
ORGLA08G0227400 Oryza glaberrima ORGLA08G0227400 N
ORGLA09G0123200 Oryza glaberrima ORGLA09G0123200 N
ORGLA12G0157500 Oryza glaberrima ORGLA12G0157500 N
ORUFI07G15560 Oryza rufipogon ORUFI07G15560 N
ORUFI08G24230 Oryza rufipogon ORUFI08G24230 N
ORUFI09G17170 Oryza rufipogon ORUFI09G17170 N
ORUFI12G20640 Oryza rufipogon ORUFI12G20640 N
OS08G0535800 Oryza sativa OS08G0535800 N
OS09G0509100 Oryza sativa OS09G0509100 N
OS12G0610600 Oryza sativa OS12G0610600 N
Pavir.J04931 Panicum virgatum Pavir.J04931 N
Pavir.J11699 Panicum virgatum Pavir.J11699 N
Pavir.J23083 Panicum virgatum Pavir.J23083 N
Sb02g029460 Sorghum bicolor Sb02g029460 N
Sb03g031000 Sorghum bicolor Sb03g031000 N
SELMODRAFT_69130 Selaginella moellendorffii SELMODRAFT_69130 N
SELMODRAFT_69131 Selaginella moellendorffii SELMODRAFT_69131 N
Si014408m.g Setaria italica Si014408m.g N
Si030942m.g Setaria italica Si030942m.g N
Traes_5AS_E5FD82E36 Triticum aestivum Traes_5AS_E5FD82E36 N
Traes_5BL_456C3408A Triticum aestivum Traes_5BL_456C3408A N
Traes_5BS_9F043AE17 Triticum aestivum Traes_5BS_9F043AE17 N
Traes_5DL_36AE1EF2B Triticum aestivum Traes_5DL_36AE1EF2B N