runx2 (Xenopus tropicalis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 XB-GENE-482021 T319705_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.962 0.962
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.962 0.962
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.962 0.962
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.962 0.962
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.962 0.962
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.962 0.962
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.962 0.962
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.962 0.962
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.962 0.962
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.962 0.962
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.962 0.962
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.962 0.962
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.908 0.908
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.908 0.908
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.908 0.908
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.908 0.908
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.908 0.908
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.908 0.908
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.908 0.908
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.908 0.908
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.908 0.908
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.908 0.908
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.908 0.908
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.908 0.908
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.885 0.885
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.885 0.885
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.885 0.885
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.885 0.885
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.885 0.885
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.885 0.885
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.885 0.885
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.885 0.885
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.885 0.885
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.885 0.885
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.885 0.885
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.885 0.885
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.700 0.700
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.700 0.700
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.700 0.700
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BAG69611 Runt 76 205

Links

Other Runt family TFs
Other Xenopus tropicalis TFs

272 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sakowv30034954m.g Saccoglossus kowalevskii Sakowv30034954m.g N
Sakowv30034955m.g Saccoglossus kowalevskii Sakowv30034955m.g N
Sakowv30034956m.g Saccoglossus kowalevskii Sakowv30034956m.g N
Sakowv30034957m.g Saccoglossus kowalevskii Sakowv30034957m.g N
Sakowv30034959m.g Saccoglossus kowalevskii Sakowv30034959m.g N
Sakowv30034960m.g Saccoglossus kowalevskii Sakowv30034960m.g N
Sakowv30034963m.g Saccoglossus kowalevskii Sakowv30034963m.g N
Sakowv30034965m.g Saccoglossus kowalevskii Sakowv30034965m.g N
Sakowv30034966m.g Saccoglossus kowalevskii Sakowv30034966m.g N
Sakowv30036994m.g Saccoglossus kowalevskii Sakowv30036994m.g N
Sakowv30036996m.g Saccoglossus kowalevskii Sakowv30036996m.g N
Sakowv30036997m.g Saccoglossus kowalevskii Sakowv30036997m.g N
Sakowv30036999m.g Saccoglossus kowalevskii Sakowv30036999m.g N
Sakowv30037000m.g Saccoglossus kowalevskii Sakowv30037000m.g N
Sakowv30037002m.g Saccoglossus kowalevskii Sakowv30037002m.g N
Sakowv30037003m.g Saccoglossus kowalevskii Sakowv30037003m.g N
Sakowv30037004m.g Saccoglossus kowalevskii Sakowv30037004m.g I
Sakowv30037005m.g Saccoglossus kowalevskii Sakowv30037005m.g N
Sakowv30037006m.g Saccoglossus kowalevskii Sakowv30037006m.g N
Sakowv30037007m.g Saccoglossus kowalevskii Sakowv30037007m.g I
Sakowv30037008m.g Saccoglossus kowalevskii Sakowv30037008m.g N
Sakowv30037009m.g Saccoglossus kowalevskii Sakowv30037009m.g N
Sakowv30037011m.g Saccoglossus kowalevskii Sakowv30037011m.g N
Sakowv30037015m.g Saccoglossus kowalevskii Sakowv30037015m.g I
Sakowv30037024m.g Saccoglossus kowalevskii Sakowv30037024m.g N
Sakowv30037025m.g Saccoglossus kowalevskii Sakowv30037025m.g N
Sakowv30037029m.g Saccoglossus kowalevskii Sakowv30037029m.g N
Sakowv30037033m.g Saccoglossus kowalevskii Sakowv30037033m.g N
Sakowv30037034m.g Saccoglossus kowalevskii Sakowv30037034m.g N
Sakowv30037039m.g Saccoglossus kowalevskii Sakowv30037039m.g I
Sakowv30037045m.g Saccoglossus kowalevskii Sakowv30037045m.g I
Sakowv30037046m.g Saccoglossus kowalevskii Sakowv30037046m.g N
Sakowv30037050m.g Saccoglossus kowalevskii Sakowv30037050m.g I
Sakowv30037051m.g Saccoglossus kowalevskii Sakowv30037051m.g N
Sakowv30037052m.g Saccoglossus kowalevskii Sakowv30037052m.g N
Sakowv30037056m.g Saccoglossus kowalevskii Sakowv30037056m.g N