CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SPL14 *(Arabidopsis thaliana)* SBP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03110 (SBP)	IPR004333	AT1G20980	T322387_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
SPL14 M02470_2.00	Arabidopsis thaliana	NNNRTACNN	NNGTAYNNN	PBM Weirauch et al.(2014) pTH8191	(Direct)	(Direct)
SPL14 M07253_2.00	Arabidopsis thaliana	NNNBGTACGGW	WCCGTACVNNN	Dap-seq OMalley et al.(2016) SPL14_col_a	(Direct)	(Direct)
SPL14 M11270_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$SPL14_01	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
POPTR_0002s00440 M02477_2.00	Populus trichocarpa	NGTACGG	CCGTACN	PBM Weirauch et al.(2014) pTH9280	0.980	0.933
AT1G76580 M02473_2.00	Arabidopsis thaliana	NNNRTAYNNN	NNNRTAYNNN	PBM Weirauch et al.(2014) pTH8668	0.977	0.960
SPL12 M02475_2.00	Arabidopsis thaliana	NGTACGDN	NHCGTACN	PBM Weirauch et al.(2014) pTH7500	0.974	0.840
PRUPE_ppa000682mg M02478_2.00	Prunus persica	NNNNGTACGD	HCGTACNNNN	PBM Weirauch et al.(2014) pTH9281	0.970	0.920
PK06791.1 M02482_2.00	Cannabis sativa	NNGTACGRN	NYCGTACNN	PBM Weirauch et al.(2014) pTH9583	0.970	0.827
SPL4 M02472_2.00	Arabidopsis thaliana	NRTACDDNN	NNHHGTAYN	PBM Weirauch et al.(2014) pTH7408	0.962	0.720
SPL1 M00887_2.00	Arabidopsis thaliana	NGTACGGHN	NDCCGTACN	PBM Franco-Zorrilla et al.(2014) SPL1	0.959	0.827
SPL1 M07259_2.00	Arabidopsis thaliana	NNNBGTACGGW	WCCGTACVNNN	Dap-seq OMalley et al.(2016) SPL1_col_a	0.959	0.827
SPL1 M07260_2.00	Arabidopsis thaliana	NNGTACGKWH	DWMCGTACNN	Dap-seq OMalley et al.(2016) SPL1_colamp_a	0.959	0.827
SPL5 M02474_2.00	Arabidopsis thaliana	NNGTACGDN	NHCGTACNN	PBM Weirauch et al.(2014) pTH7385	0.957	0.720
SPL5 M07261_2.00	Arabidopsis thaliana	NDNYGTACGGAH	DTCCGTACRNHN	Dap-seq OMalley et al.(2016) SPL5_col_a	0.957	0.720
SPL5 M07262_2.00	Arabidopsis thaliana	NBGTACGGWH	DWCCGTACVN	Dap-seq OMalley et al.(2016) SPL5_colamp_a	0.957	0.720
PK22320.1 M02483_2.00	Cannabis sativa	NNGTACGGNN	NNCCGTACNN	PBM Weirauch et al.(2014) pTH9723	0.951	0.707
estExt_fgenesh1_pg.C_1940033 M02479_2.00	Physcomitrella patens	NNGTACGDH	DHCGTACNN	PBM Weirauch et al.(2014) pTH8664	0.947	0.733
SPL3 M07255_2.00	Arabidopsis thaliana	NGTACGGA	TCCGTACN	Dap-seq OMalley et al.(2016) SPL3_col_a	0.931	0.693
SPL3 M07256_2.00	Arabidopsis thaliana	NDNTGTACGGAHN	NDTCCGTACANHN	Dap-seq OMalley et al.(2016) SPL3_colamp_a	0.931	0.693
SPL3 M02715_2.00	Arabidopsis thaliana	DDDDDNGTACGKHHHH	DDDDMCGTACNHHHHH	SELEX Mathelier et al.(2014) MA0577.1	0.931	0.693
SPL13A M07265_2.00	Arabidopsis thaliana	DNYGTACGGWH	DWCCGTACRNH	Dap-seq OMalley et al.(2016) SPL13_col_a	0.907	0.653
For this family, TFs with SR scores > 0.885* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M02470_2.00	SBP	52	126	CQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKT

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AT1G20980.1	SBP	120	194	CQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKT

Links
Other SBP family TFs
Other *Arabidopsis thaliana* TFs

509 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACEP26642	Atta cephalotes	ACEP26642	N	0.000
AFAF010393	Anopheles farauti	AFAF010393	N	0.000
AFUN009891	Anopheles funestus	AFUN009891	N	0.000
AMEM013442	Anopheles merus	AMEM013442	N	0.000
ANCCAN_09492	Ancylostoma caninum	ANCCAN_09492	N	0.000
ANCDUO_04788	Ancylostoma duodenale	ANCDUO_04788	N	0.000
ASTEI11512	Anopheles stephensi	ASTEI11512	N	0.000
augustus_masked-nMf.1.1.scaf10960-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf10960-processed-gene-0.0	I	0.000
BGIBMGA010273	Bombyx mori	BGIBMGA010273	N	0.000
Bm1891	Brugia malayi	Bm1891	N	0.000
BTMF_0001195401	Brugia timori	BTMF_0001195401	N	0.000
BXY_0663500	Bursaphelenchus xylophilus	BXY_0663500	N	0.000
CBG12337	Caenorhabditis briggsae	CBG12337	N	0.000
CBN07938	Caenorhabditis brenneri	CBN07938	N	0.000
Cflo_01219--XP_395512.3_APIME	Camponotus floridanus	Cflo_01219--XP_395512.3_APIME	N	0.000
CJA11729	Caenorhabditis japonica	CJA11729	N	0.000
CLEC012210	Cimex lectularius	CLEC012210	N	0.000
CRE29533	Caenorhabditis remanei	CRE29533	N	0.000
DAPPUDRAFT_327651	Daphnia pulex	DAPPUDRAFT_327651	N	0.000
DME_0001005001	Dracunculus medinensis	DME_0001005001	N	0.000
EEL_0001008901	Elaeophora elaphi	EEL_0001008901	N	0.000
EVEC_0000024601	Enterobius vermicularis	EVEC_0000024601	N	0.000
GA26236	Drosophila pseudoobscura	FBgn0247610	N	0.000
GB44899	Apis mellifera	GB44899	N	0.000
GF23141	Drosophila ananassae	FBgn0100135	N	0.000
GG16758	Drosophila erecta	FBgn0108988	N	0.000
GH15872	Drosophila grimshawi	FBgn0123343	N	0.000
GI23637	Drosophila mojavensis	FBgn0146363	N	0.000
GJ24712	Drosophila virilis	FBgn0211788	N	0.000
GK22507	Drosophila willistoni	FBgn0224484	N	0.000
GM15347	Drosophila sechellia	FBgn0170267	N	0.000
GPLIN_000077900	Globodera pallida	GPLIN_000077900	N	0.000
GPUH_0000112301	Gongylonema pulchrum	GPUH_0000112301	N	0.000
HCOI00324200	Haemonchus contortus	HCOI00324200	N	0.000
HHAL005964-PA	Halyomorpha halys	HHAL005964-PA	N	0.000
HPBE_0000983501	Heligmosomoides bakeri	HPBE_0000983501	N	0.000
HPLM_0000291901	Haemonchus placei	HPLM_0000291901	N	0.000
Hsal_01939--XP_395512.3_APIME	Harpegnathos saltator	Hsal_01939--XP_395512.3_APIME	N	0.000
KGM_12579	Danaus plexippus	KGM_12579	N	0.000
L596_g4117	Steinernema carpocapsae	L596_g4117	N	0.000
L889_g180	Steinernema feltiae	L889_g180	N	0.000
L892_g19705	Steinernema scapterisci	L892_g19705	N	0.000
L893_g29191	Steinernema glaseri	L893_g29191	N	0.000
L898_g7337	Steinernema monticolum	L898_g7337	N	0.000
LCUP015823	Lucilia cuprina	LCUP015823	N	0.000
LDEC011073	Leptinotarsa decemlineata	LDEC011073	I	0.000
let-526	Caenorhabditis elegans	WBGene00002717	N	0.000
MhA1_Contig163.frz3.gene26	Meloidogyne hapla	MhA1_Contig163.frz3.gene26	I	0.000
nAv.1.0.1.g00338	Acanthocheilonema viteae	nAv.1.0.1.g00338	N	0.000
NBR_0002081701	Nippostrongylus brasiliensis	NBR_0002081701	N	0.000
nDi.2.2.2.g04479	Dirofilaria immitis	nDi.2.2.2.g04479	N	0.000
NECAME_01002	Necator americanus	NECAME_01002	N	0.000
nLs.2.1.2.g09434	Litomosoides sigmodontis	nLs.2.1.2.g09434	N	0.000
nOo.2.0.1.g08403	Onchocerca ochengi	nOo.2.0.1.g08403	N	0.000
NV21537	Nasonia vitripennis	NV21537	N	0.000
OESDEN_04600	Oesophagostomum dentatum	OESDEN_04600	N	0.000
OFLC_0001383401	Onchocerca flexuosa	OFLC_0001383401	N	0.000
osa	Drosophila yakuba	FBgn0041640	N	0.000
osa	Drosophila melanogaster	FBgn0261885	N	0.000
PEQ_0000742201	Parascaris equorum	PEQ_0000742201	N	0.000
PHUM080380	Pediculus humanus	PHUM080380	N	0.000
PPA05721	Pristionchus pacificus	PPA05721	N	0.000
PPAI002183	Phlebotomus papatasi	PPAI002183	N	0.000
PTRK_0001699800	Parastrongyloides trichosuri	PTRK_0001699800	N	0.000
SBAD_0000668001	Soboliphyme baturini	SBAD_0000668001	N	0.000
scaffold2015-EXSNAP2012.2	Pristionchus exspectatus	scaffold2015-EXSNAP2012.2	N	0.000
SINV22763	Solenopsis invicta	SINV22763	N	0.000
SMU15038692	Schmidtea mediterranea	SMU15038692	N	0.000
SPAL_0001124500	Strongyloides papillosus	SPAL_0001124500	N	0.000
SSTP_0000977600	Strongyloides stercoralis	SSTP_0000977600	N	0.000
SVE_1830100	Strongyloides venezuelensis	SVE_1830100	N	0.000
TC013586	Tribolium castaneum	TC013586	N	0.000
TCLT_0000619901	Thelazia callipaeda	TCLT_0000619901	N	0.000
TCNE_0000128301	Toxocara canis	TCNE_0000128301	N	0.000
TELCIR_03263	Teladorsagia circumcincta	TELCIR_03263	N	0.000
WBGene00237224	Onchocerca volvulus	WBGene00237224	N	0.000
WUBG_00477	Wuchereria bancrofti	WUBG_00477	N	0.000
YQE_09239	Dendroctonus ponderosae	YQE_09239	N	0.000

SPL14 (Arabidopsis thaliana) SBP

TF Information

Directly determined binding motifs

Motifs from related TFs

Experimental Constructs

DNA Binding Domains

Links

509 Related TFs

SPL14 **(Arabidopsis thaliana)
SBP**