Bra021094 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra021094 T322466_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.939 0.893
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.939 0.893
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.939 0.893
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.928 0.707
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.928 0.707
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.928 0.707
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.922 0.787
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.921 0.707
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.921 0.707
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.921 0.707
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.918 0.680
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.918 0.693
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.913 0.680
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.911 0.680
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.910 0.600
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.906 0.733
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.903 0.707
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.887 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021094.1-P SBP 61 135

Links

Other SBP family TFs
Other Brassica rapa TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28211.m000132 Ricinus communis 28211.m000132 I 0.921
29889.m003388 Ricinus communis 29889.m003388 I 0.904
30076.m004574 Ricinus communis 30076.m004574 I 0.903
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.908
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.904
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.920
AT1G76580 Arabidopsis thaliana AT1G76580 D 0.911
Bo1g129690 Brassica oleracea Bo1g129690 I 0.982
Bo2g091010 Brassica oleracea Bo2g091010 I 0.921
Bo3g024180 Brassica oleracea Bo3g024180 I 0.910
Bo4g005730 Brassica oleracea Bo4g005730 I 0.903
Bo4g042390 Brassica oleracea Bo4g042390 I 0.888
Bo5g030930 Brassica oleracea Bo5g030930 I 0.919
Bo5g127310 Brassica oleracea Bo5g127310 I 0.960
Bo6g029290 Brassica oleracea Bo6g029290 I 0.912
Bo6g031220 Brassica oleracea Bo6g031220 I 0.936
Bo6g120690 Brassica oleracea Bo6g120690 I 0.922
Bo9g097630 Brassica oleracea Bo9g097630 I 0.912
Bo9g137270 Brassica oleracea Bo9g137270 I 0.982
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.922
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.911
Bostr.20129s0096 Boechera stricta Bostr.20129s0096 I 0.921
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.903
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.956
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.901
Bostr.7128s0689 Boechera stricta Bostr.7128s0689 I 0.928
Bra005470 Brassica rapa Bra005470 I 0.888
Bra015732 Brassica rapa Bra015732 I 0.922
Bra022766 Brassica rapa Bra022766 I 0.896
Bra025863 Brassica rapa Bra025863 I 0.922
Bra027265 Brassica rapa Bra027265 I 0.960
Bra038101 Brassica rapa Bra038101 I 0.932
Bra039656 Brassica rapa Bra039656 I 0.936
Bra041037 Brassica rapa Bra041037 I 0.903
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.905
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.903
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.943
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.910
Cagra.1472s0017 Capsella grandiflora Cagra.1472s0017 I 0.909
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.903
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.901
Carubv10008169m.g Capsella rubella Carubv10008169m.g I 0.928
Carubv10010422m.g Capsella rubella Carubv10010422m.g I 0.909
Carubv10012577m.g Capsella rubella Carubv10012577m.g I 0.928
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.943
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.901
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.910
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.900
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.900
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.902
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.903
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.918
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.899
Ca_01036 Cicer arietinum Ca_01036 I 0.920
Ca_03548 Cicer arietinum Ca_03548 I 0.903
Ca_05711 Cicer arietinum Ca_05711 I 0.896
Ca_18591 Cicer arietinum Ca_18591 I 0.925
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.926
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.904
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.902
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.886
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.927
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.903
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.894
Cla002263 Citrullus lanatus Cla002263 I 0.907
Cla002666 Citrullus lanatus Cla002666 I 0.892
Cla017596 Citrullus lanatus Cla017596 I 0.896
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.900
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.891
Cucsa.192470 Cucumis sativus Cucsa.192470 I 0.896
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.892
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.896
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.887
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.903
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.905
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.898
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.923
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.895
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.896
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.918
F775_27970 Aegilops tauschii F775_27970 I 0.903
F775_31139 Aegilops tauschii F775_31139 I 0.905
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.887
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.891
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I 0.892
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.898
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.907
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.905
GLYMA07G36180 Glycine max GLYMA07G36180 I 0.925
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.915
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.902
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.907
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.900
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.918
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.886
Gorai.002G068300 Gossypium raimondii Gorai.002G068300 I 0.916
Gorai.002G112200 Gossypium raimondii Gorai.002G112200 I 0.913
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.897
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I 0.925
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.905
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.903
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.919
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.886
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.915
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.904
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.893
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.909
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.900
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.896
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.891
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.901
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.886
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.900
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.893
gw1.47.180.1 Physcomitrella patens gw1.47.180.1 I 0.895
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.903
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.908
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.903
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.903
MDP0000149339 Malus domestica MDP0000149339 I 0.906
MDP0000180408 Malus domestica MDP0000180408 I 0.901
MDP0000180409 Malus domestica MDP0000180409 I 0.899
MDP0000919693 Malus domestica MDP0000919693 I 0.903
MDP0000919694 Malus domestica MDP0000919694 I 0.899
mgf009459m Mimulus guttatus mgf009459m I 0.898
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.903
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.905
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.901
MTR_2g046550 Medicago truncatula MTR_2g046550 I 0.925
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.920
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.896
OB03G47050 Oryza brachyantha OB03G47050 I 0.912
OB08G27190 Oryza brachyantha OB08G27190 I 0.904
OBART03G39900 Oryza barthii OBART03G39900 I 0.912
OBART08G20320 Oryza barthii OBART08G20320 I 0.899
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.912
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.899
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.899
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.899
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.912
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.912
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.899
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.912
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.912
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.899
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.903
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.911
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.925
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.886
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.912
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.899
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.912
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.899
Pavir.Bb02800 Panicum virgatum Pavir.Bb02800 N 0.900
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.904
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.904
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.908
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.896
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I 0.927
PK02140.1 Cannabis sativa PK02140.1 I 0.897
PK06791.1 Cannabis sativa PK06791.1 D 0.903
PK22320.1 Cannabis sativa PK22320.1 D 0.906
Pm008474 Prunus mume Pm008474 I 0.899
Pm008475 Prunus mume Pm008475 I 0.899
Pm017778 Prunus mume Pm017778 I 0.886
Pm022881 Prunus mume Pm022881 I 0.913
Pm024528 Prunus mume Pm024528 I 0.892
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.915
POPTR_0002s00440 Populus trichocarpa POPTR_0002s00440 D 0.918
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.896
POPTR_0005s28010 Populus trichocarpa POPTR_0005s28010 I 0.921
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.891
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I 0.925
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.914
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.892
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.896
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.893
PRUPE_ppa000682mg Prunus persica PRUPE_ppa000682mg D 0.913
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I 0.899
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.901
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.892
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.895
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.886
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.896
SapurV1A.0016s0070 Salix purpurea SapurV1A.0016s0070 I 0.921
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.902
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.914
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.892
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.896
SapurV1A.0554s0130 Salix purpurea SapurV1A.0554s0130 I 0.912
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.890
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.906
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.904
scaffold_202615.1 Arabidopsis lyrata scaffold_202615.1 I 0.911
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.911
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.912
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.912
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.904
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.904
Si031154m.g Setaria italica Si031154m.g I 0.912
Si034095m.g Setaria italica Si034095m.g I 0.904
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.896
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I 0.927
SPL1 Arabidopsis thaliana AT2G47070 D 0.921
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.900
SPL12 Arabidopsis thaliana AT3G60030 D 0.918
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.895
SPL13A Arabidopsis thaliana AT5G50570 I 0.910
SPL13A Arabidopsis thaliana AT5G50670 D 0.910
SPL14 Arabidopsis thaliana AT1G20980 D 0.928
SPL14 Arabidopsis lyrata fgenesh2_kg.1__2292__AT1G20980.1 I 0.928
SPL15 Oryza indica BGIOSGA028994 I 0.899
SPL4 Arabidopsis thaliana AT1G53160 D 0.922
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.918
SPL5 Arabidopsis thaliana AT3G15270 D 0.939
SPL6 Oryza sativa OS03G0833300 I 0.912
TCM_004922 Theobroma cacao TCM_004922 I 0.902
TCM_008671 Theobroma cacao TCM_008671 I 0.919
TCM_021482 Theobroma cacao TCM_021482 I 0.901
TCM_031595 Theobroma cacao TCM_031595 I 0.915
TCM_034803 Theobroma cacao TCM_034803 I 0.921
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.903
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.905
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.926
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.912
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.896
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.958
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.905
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.903
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.905
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.903
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.903
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.903
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.905
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.901
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.903
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.911