fgenesh1_pg.scaffold_252000020 (Physcomitrella patens)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 fgenesh1_pg.scaffold_252000020 T323294_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00		 Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.980 0.947
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.936 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02481_2.00 SBP 52 126

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_252000020 SBP 433 507

Links

Other SBP family TFs
Other Physcomitrella patens TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACLA_091790 Aspergillus clavatus CADACLAG00008428 I
AFUA_2G03050 Aspergillus fumigatus CADAFUAG00003366 N
BDDG_01940 Blastomyces dermatitidis BDDG_01940 N
CADANGAG00006018 Aspergillus niger CADANGAG00006018 N
e_gw1.00219.2.1 Aspergillus carbonarius e_gw1.00219.2.1 N
HCBG_00490 Histoplasma capsulatum HCBG_00490 N