Eucgr.K01046 (Eucalyptus grandis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Eucgr.K01046 T323459_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.940 0.733
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.940 0.800
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.938 0.720
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.938 0.720
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.938 0.720
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.935 0.707
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.933 0.760
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.930 0.707
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.930 0.707
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.930 0.707
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.927 0.760
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.927 0.760
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.927 0.760
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.921 0.680
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.919 0.707
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.913 0.680
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.908 0.760
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.908 0.760
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.908 0.760
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.905 0.680
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.K01046.1 SBP 117 191
Eucgr.K01046.2 SBP 70 144
Eucgr.K01046.3 SBP 59 133
Eucgr.K01046.4 SBP 59 110

Links

Other SBP family TFs
Other Eucalyptus grandis TFs

365 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30055.m001589 Ricinus communis 30055.m001589 I 0.000
30131.m007263 Ricinus communis 30131.m007263 I 0.000
Aquca_004_00257 Aquilegia coerulea Aquca_004_00257 N 0.000
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.000
cassava42566.valid.m1 Manihot esculenta cassava42566.valid.m1 N 0.000
Ca_05454 Cicer arietinum Ca_05454 I 0.000
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.000
Cla014242 Citrullus lanatus Cla014242 N 0.000
Cla020348 Citrullus lanatus Cla020348 I 0.000
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.000
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.000
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.000
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.000
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.000
Gorai.006G113100 Gossypium raimondii Gorai.006G113100 N 0.000
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.000
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.000
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.000
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.000
MDP0000289018 Malus domestica MDP0000289018 I 0.000
mgf009460m Mimulus guttatus mgf009460m I 0.000
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.000
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N 0.000
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.000
PGSC0003DMG400007603 Solanum tuberosum PGSC0003DMG400007603 N 0.000
PGSC0003DMG400023495 Solanum tuberosum PGSC0003DMG400023495 N 0.000
PK13672.1 Cannabis sativa PK13672.1 I 0.000
Pm006046 Prunus mume Pm006046 I 0.000
Pm017050 Prunus mume Pm017050 I 0.000
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.000
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.000
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.000
Solyc05g055240.2 Solanum lycopersicum Solyc05g055240.2 N 0.000
Solyc11g006720.1 Solanum lycopersicum Solyc11g006720.1 N 0.000
TCM_041362 Theobroma cacao TCM_041362 N 0.000
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.000
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.000