Gorai.013G095700 (Gossypium raimondii)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Gorai.013G095700 T323520_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.946 0.707
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.915 0.800
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.902 0.733
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.902 0.733
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.902 0.733
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.900 0.707
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.896 0.667
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.890 0.720
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.890 0.707
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.889 0.733
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G095700.1 SBP 140 214
Gorai.013G095700.2 SBP 171 245
Gorai.013G095700.3 SBP 171 245

Links

Other SBP family TFs
Other Gossypium raimondii TFs

438 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_003840 Acremonium chrysogenum ACRE_003840 N 0.000
CCM_06003 Cordyceps militaris CCM_06003 N 0.000
CPUR_04130 Claviceps purpurea CPUR_04130 N 0.000
estExt_Genewise1.C_80993 Neurospora discreta estExt_Genewise1.C_80993 I 0.000
e_gw1.18.1677.1 Nectria haematococca e_gw1.18.1677.1 N 0.000
MAC_04531 Metarhizium acridum MAC_04531 N 0.000
MAJ_04735 Metarhizium majus MAJ_04735 N 0.000
MANI_014813 Metarhizium anisopliae MANI_014813 N 0.000
MBR_07932 Metarhizium brunneum MBR_07932 N 0.000
NechaG33514 Fusarium solani NechaG33514 N 0.000
PODANS_5_5100 Podospora anserina PODANS_5_5100 I 0.000
TRIATDRAFT_238530 Trichoderma atroviride TRIATDRAFT_238530 I 0.000
TRIREDRAFT_65854 Trichoderma reesei TRIREDRAFT_65854 I 0.000
TRIVIDRAFT_66076 Trichoderma virens TRIVIDRAFT_66076 N 0.000
UV8b_7244 Ustilaginoidea virens UV8b_7244 N 0.000
X797_007984 Metarhizium robertsii X797_007984 N 0.000