Lus10042882.g (Linum usitatissimum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Lus10042882.g T323550_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.981 0.907
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.933 0.773
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.931 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10042882 SBP 178 252

Links

Other SBP family TFs
Other Linum usitatissimum TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006833 Calypte anna Aan_R006833 I 0.000
Afo_R009473 Aptenodytes forsteri Afo_R009473 I 0.000
Alligator_sinensis_CCG013281.1 Alligator sinensis Alligator_sinensis_CCG013281.1 I 0.000
Alligator_sinensis_CCG017455.1 Alligator sinensis Alligator_sinensis_CCG017455.1 I 0.000
ARID5A Bos taurus ENSBTAG00000014090 I 0.000
ARID5A Canis familiaris ENSCAFG00000006546 I 0.000
ARID5A Callithrix jacchus ENSCJAG00000007759 I 0.000
ARID5A Cavia porcellus ENSCPOG00000026444 I 0.000
arid5a Danio rerio ENSDARG00000077120 I 0.000
ARID5A Dasypus novemcinctus ENSDNOG00000035690 I 0.000
Arid5a Dipodomys ordii ENSDORG00000002540 I 0.000
ARID5A Equus caballus ENSECAG00000023667 I 0.000
ARID5A Erinaceus europaeus ENSEEUG00000008247 I 0.000
ARID5A Felis catus ENSFCAG00000024950 I 0.000
ARID5A Homo sapiens ENSG00000196843 I 0.000
ARID5A Gorilla gorilla ENSGGOG00000017068 I 0.000
ARID5A Loxodonta africana ENSLAFG00000009162 I 0.000
ARID5A Myotis lucifugus ENSMLUG00000003208 I 0.000
ARID5A Macaca mulatta ENSMMUG00000030744 I 0.000
ARID5A Monodelphis domestica ENSMODG00000008611 I 0.000
Arid5a Mus musculus ENSMUSG00000037447 D 0.000
ARID5A Oryctolagus cuniculus ENSOCUG00000012101 I 0.000
ARID5A Otolemur garnettii ENSOGAG00000004116 I 0.000
ARID5A Ochotona princeps ENSOPRG00000015571 I 0.000
ARID5A Procavia capensis ENSPCAG00000006363 I 0.000
ARID5A Pan troglodytes ENSPTRG00000012234 I 0.000
ARID5A Pteropus vampyrus ENSPVAG00000009400 I 0.000
Arid5a Rattus norvegicus ENSRNOG00000015382 D 0.000
ARID5A Sus scrofa ENSSSCG00000008123 I 0.000
ARID5A Tursiops truncatus ENSTTRG00000007812 I 0.000
ARID5B Anolis carolinensis ENSACAG00000010922 I 0.000
ARID5B Bos taurus ENSBTAG00000006729 I 0.000
ARID5B Canis familiaris ENSCAFG00000012991 I 0.000
ARID5B Choloepus hoffmanni ENSCHOG00000011695 I 0.000
ARID5B Callithrix jacchus ENSCJAG00000007072 I 0.000
arid5b Danio rerio ENSDARG00000037196 I 0.000
ARID5B Dasypus novemcinctus ENSDNOG00000043861 I 0.000
ARID5B Equus caballus ENSECAG00000019795 I 0.000
ARID5B Erinaceus europaeus ENSEEUG00000000691 I 0.000
ARID5B Echinops telfairi ENSETEG00000002612 I 0.000
ARID5B Felis catus ENSFCAG00000026767 I 0.000
ARID5B Homo sapiens ENSG00000150347 D 0.000
arid5b Gasterosteus aculeatus ENSGACG00000010603 I 0.000
ARID5B Gorilla gorilla ENSGGOG00000004127 I 0.000
ARID5B Loxodonta africana ENSLAFG00000015576 I 0.000
ARID5B Meleagris gallopavo ENSMGAG00000003626 I 0.000
ARID5B Myotis lucifugus ENSMLUG00000013447 I 0.000
ARID5B Macaca mulatta ENSMMUG00000000424 I 0.000
ARID5B Monodelphis domestica ENSMODG00000017102 I 0.000
Arid5b Mus musculus ENSMUSG00000019947 D 0.000
ARID5B Ornithorhynchus anatinus ENSOANG00000015260 I 0.000
ARID5B Oryctolagus cuniculus ENSOCUG00000027029 I 0.000
ARID5B Otolemur garnettii ENSOGAG00000015939 I 0.000
ARID5B Procavia capensis ENSPCAG00000002044 I 0.000
ARID5B Pan troglodytes ENSPTRG00000002534 I 0.000
ARID5B Pteropus vampyrus ENSPVAG00000010482 I 0.000
ARID5B Sorex araneus ENSSARG00000002423 I 0.000
ARID5B Sus scrofa ENSSSCG00000010219 I 0.000
ARID5B Taeniopygia guttata ENSTGUG00000005270 I 0.000
arid5b Tetraodon nigroviridis ENSTNIG00000007478 I 0.000
arid5b Takifugu rubripes ENSTRUG00000010671 I 0.000
arid5b Xenopus tropicalis XB-GENE-1007579 I 0.000
arid6 Danio rerio ENSDARG00000069988 D 0.000
Brh_R002693 Buceros rhinoceros Brh_R002693 I 0.000
Cflo_07446--XP_395512.3_APIME Camponotus floridanus Cflo_07446--XP_395512.3_APIME I 0.000
Cmyd_10001620 Chelonia mydas Cmyd_10001620 I 0.000
Cmyd_10021475 Chelonia mydas Cmyd_10021475 I 0.000
ENSAMEG00000003626 Ailuropoda melanoleuca ENSAMEG00000003626 I 0.000
ENSAMEG00000008932 Ailuropoda melanoleuca ENSAMEG00000008932 I 0.000
ENSAMXG00000005409 Astyanax mexicanus ENSAMXG00000005409 I 0.000
ENSAMXG00000006897 Astyanax mexicanus ENSAMXG00000006897 I 0.000
ENSAMXG00000012004 Astyanax mexicanus ENSAMXG00000012004 I 0.000
ENSAPLG00000010915 Anas platyrhynchos ENSAPLG00000010915 I 0.000
ENSBTAP00000008847-D1 Bos grunniens ENSBTAP00000008847-D1 I 0.000
ENSCING00000013307 Ciona intestinalis ENSCING00000013307 I 0.000
ENSCPOG00000003685 Cavia porcellus ENSCPOG00000003685 I 0.000
ENSCSAG00000007410 Chlorocebus sabaeus ENSCSAG00000007410 I 0.000
ENSCSAG00000017355 Chlorocebus sabaeus ENSCSAG00000017355 I 0.000
ENSFALG00000000299 Ficedula albicollis ENSFALG00000000299 I 0.000
ENSFALG00000013304 Ficedula albicollis ENSFALG00000013304 I 0.000
ENSGACG00000015846 Gasterosteus aculeatus ENSGACG00000015846 I 0.000
ENSGALG00000002991 Gallus gallus ENSGALG00000002991 I 0.000
ENSGALG00000027335 Gallus gallus ENSGALG00000027335 I 0.000
ENSGMOG00000004984 Gadus morhua ENSGMOG00000004984 I 0.000
ENSGMOG00000008075 Gadus morhua ENSGMOG00000008075 I 0.000
ENSLACG00000014124 Latimeria chalumnae ENSLACG00000014124 I 0.000
ENSLACG00000015032 Latimeria chalumnae ENSLACG00000015032 I 0.000
ENSLOCG00000005151 Lepisosteus oculatus ENSLOCG00000005151 I 0.000
ENSLOCG00000006809 Lepisosteus oculatus ENSLOCG00000006809 I 0.000
ENSLOCG00000012316 Lepisosteus oculatus ENSLOCG00000012316 I 0.000
ENSLOCG00000015055 Lepisosteus oculatus ENSLOCG00000015055 I 0.000
ENSMEUG00000005354 Macropus eugenii ENSMEUG00000005354 I 0.000
ENSMEUG00000014406 Macropus eugenii ENSMEUG00000014406 I 0.000
ENSMICG00000010866 Microcebus murinus ENSMICG00000010866 I 0.000
ENSMPUG00000008907 Mustela putorius furo ENSMPUG00000008907 I 0.000
ENSMPUG00000011076 Mustela putorius furo ENSMPUG00000011076 I 0.000
ENSNLEG00000012110 Nomascus leucogenys ENSNLEG00000012110 I 0.000
ENSOARG00000004403 Ovis aries ENSOARG00000004403 I 0.000
ENSONIG00000000889 Oreochromis niloticus ENSONIG00000000889 I 0.000
ENSONIG00000010644 Oreochromis niloticus ENSONIG00000010644 I 0.000
ENSORLG00000004756 Oryzias latipes ENSORLG00000004756 I 0.000
ENSORLG00000011620 Oryzias latipes ENSORLG00000011620 I 0.000
ENSORLG00000018351 Oryzias latipes ENSORLG00000018351 I 0.000
ENSP00000279873 Macaca fascicularis ENSP00000279873 I 0.000
ENSPANG00000012565 Papio anubis ENSPANG00000012565 I 0.000
ENSPANG00000022067 Papio anubis ENSPANG00000022067 I 0.000
ENSPFOG00000010024 Poecilia formosa ENSPFOG00000010024 I 0.000
ENSPFOG00000012334 Poecilia formosa ENSPFOG00000012334 I 0.000
ENSPFOG00000012795 Poecilia formosa ENSPFOG00000012795 I 0.000
ENSPFOG00000022560 Poecilia formosa ENSPFOG00000022560 I 0.000
ENSPMAG00000002699 Petromyzon marinus ENSPMAG00000002699 I 0.000
ENSPMAG00000009067 Petromyzon marinus ENSPMAG00000009067 I 0.000
ENSPPYG00000002417 Pongo abelii ENSPPYG00000002417 I 0.000
ENSPPYG00000012072 Pongo abelii ENSPPYG00000012072 I 0.000
ENSPSIG00000010908 Pelodiscus sinensis ENSPSIG00000010908 I 0.000
ENSPSIG00000014127 Pelodiscus sinensis ENSPSIG00000014127 I 0.000
ENSSHAG00000012252 Sarcophilus harrisii ENSSHAG00000012252 I 0.000
ENSSHAG00000018209 Sarcophilus harrisii ENSSHAG00000018209 I 0.000
ENSSTOG00000019546 Ictidomys tridecemlineatus ENSSTOG00000019546 I 0.000
ENSSTOG00000023423 Ictidomys tridecemlineatus ENSSTOG00000023423 I 0.000
ENSTGUG00000015609 Taeniopygia guttata ENSTGUG00000015609 I 0.000
ENSTNIG00000006278 Tetraodon nigroviridis ENSTNIG00000006278 I 0.000
ENSTRUG00000001547 Takifugu rubripes ENSTRUG00000001547 I 0.000
ENSTSYG00000010758 Tarsius syrichta ENSTSYG00000010758 I 0.000
ENSXMAG00000001883 Xiphophorus maculatus ENSXMAG00000001883 I 0.000
ENSXMAG00000011937 Xiphophorus maculatus ENSXMAG00000011937 I 0.000
ENSXMAG00000018209 Xiphophorus maculatus ENSXMAG00000018209 I 0.000
e_gw.4.260.1_CONSTRUCT PBM CONSTRUCTS e_gw.4.260.1_CONSTRUCT D 0.000
GB52601 Apis mellifera GB52601 I 0.000
Gfo_R015732 Geospiza fortis Gfo_R015732 I 0.000
Hsal_01506--XP_395512.3_APIME Harpegnathos saltator Hsal_01506--XP_395512.3_APIME I 0.000
ISCW010123 Ixodes scapularis ISCW010123 I 0.000
L798_01524 Zootermopsis nevadensis L798_01524 I 0.000
Myotis_brandtii_ARID5A_10013684 Myotis brandtii Myotis_brandtii_ARID5A_10013684 I 0.000
Myotis_brandtii_ARID5B_10031403 Myotis brandtii Myotis_brandtii_ARID5B_10031403 I 0.000
NEMVEDRAFT_v1g81183 Nematostella vectensis NEMVEDRAFT_v1g81183 I 0.000
NV18117 Nasonia vitripennis NV18117 I 0.000
Ocbimv22018673m.g Octopus bimaculoides Ocbimv22018673m.g I 0.000
Ogr03010 Ophisaurus gracilis Ogr03010 I 0.000
Ogr08677 Ophisaurus gracilis Ogr08677 I 0.000
Pvit_18395 Pogona vitticeps Pvit_18395 I 0.000
Sakowv30045810m.g Saccoglossus kowalevskii Sakowv30045810m.g I 0.000
SMAR000821 Strigamia maritima SMAR000821 I 0.000
SPU_011640 Strongylocentrotus purpuratus SPU_011640 I 0.000
Tal_R007047 Tyto alba Tal_R007047 I 0.000
tetur19g00310 Tetranychus urticae tetur19g00310 I 0.000
XP_002159148.1 Hydra magnipapillata XP_002159148.1 I 0.000
zgc:77151 Danio rerio ENSDARG00000054307 I 0.000