OLONG_000145 (Oryza longistaminata)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 OLONG_000145 T323900_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_000145-R1 Sigma 70 230 300

Links

Other Sigma 70 family TFs
Other Oryza longistaminata TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27956.m000359 Ricinus communis 27956.m000359 I
30125.m001257 Ricinus communis 30125.m001257 I
30190.m011268 Ricinus communis 30190.m011268 I
AMTR_s00032p00221670 Amborella trichopoda AMTR_s00032p00221670 I
AMTR_s00079p00143780 Amborella trichopoda AMTR_s00079p00143780 I
Aquca_013_00221 Aquilegia coerulea Aquca_013_00221 I
Aquca_020_00444 Aquilegia coerulea Aquca_020_00444 I
Aquca_030_00294 Aquilegia coerulea Aquca_030_00294 I
AtMYB103 Arabidopsis thaliana AT1G63910 I
AtMYB103 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000072 I
AtMYB103 Vitis vinifera VIT_02s0025g00320 I
ATY53 Arabidopsis thaliana AT3G12720 D
ATY53 Arabidopsis lyrata scaffold_301452.1 I
ATY53 Vitis vinifera VIT_19s0085g00940 I
BGIOSGA004306 Oryza indica BGIOSGA004306 I
BGIOSGA010658 Oryza indica BGIOSGA010658 I
BGIOSGA024270 Oryza indica BGIOSGA024270 I
BGIOSGA026208 Oryza indica BGIOSGA026208 I
BGIOSGA027659 Oryza indica BGIOSGA027659 I
BGIOSGA036092 Oryza indica BGIOSGA036092 I
Bo1g134790 Brassica oleracea Bo1g134790 I
Bo1g138990 Brassica oleracea Bo1g138990 I
Bo5g133210 Brassica oleracea Bo5g133210 I
Bo8g111090 Brassica oleracea Bo8g111090 I
Bo9g029530 Brassica oleracea Bo9g029530 I
Bo9g033970 Brassica oleracea Bo9g033970 I
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I
Bostr.29223s0142 Boechera stricta Bostr.29223s0142 I
Bostr.3640s0047 Boechera stricta Bostr.3640s0047 I
Bra020016 Brassica rapa Bra020016 I
Bra021515 Brassica rapa Bra021515 I
Bra027389 Brassica rapa Bra027389 I
Bra031669 Brassica rapa Bra031669 I
Bra032028 Brassica rapa Bra032028 I
Bra034738 Brassica rapa Bra034738 I
Bra039339 Brassica rapa Bra039339 I
BRADI1G26920 Brachypodium distachyon BRADI1G26920 I
BRADI1G61397 Brachypodium distachyon BRADI1G61397 I
BRADI2G40620 Brachypodium distachyon BRADI2G40620 I
BRADI2G47887 Brachypodium distachyon BRADI2G47887 I
BRADI3G17165 Brachypodium distachyon BRADI3G17165 I
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I
Cagra.10702s0006 Capsella grandiflora Cagra.10702s0006 I
Cagra.5641s0037 Capsella grandiflora Cagra.5641s0037 I
Cagra.6972s0001 Capsella grandiflora Cagra.6972s0001 I
Carubv10015099m.g Capsella rubella Carubv10015099m.g I
Carubv10015767m.g Capsella rubella Carubv10015767m.g I
Carubv10020714m.g Capsella rubella Carubv10020714m.g I
Carubv10021858m.g Capsella rubella Carubv10021858m.g I
cassava11527.m1 Manihot esculenta cassava11527.m1 I
cassava176.valid.m1 Manihot esculenta cassava176.valid.m1 I
cassava26068.m1 Manihot esculenta cassava26068.m1 I
cassava33147.m1 Manihot esculenta cassava33147.m1 I
cassava33475.m1 Manihot esculenta cassava33475.m1 I
cassava34928.m1 Manihot esculenta cassava34928.m1 I
cassava39324.m1 Manihot esculenta cassava39324.m1 I
cassava44228.m1 Manihot esculenta cassava44228.m1 I
Ca_02730 Cicer arietinum Ca_02730 I
Ca_10069 Cicer arietinum Ca_10069 I
chr3.CM0049.330.nc Lotus japonicus chr3.CM0049.330.nc I
Ciclev10006752m.g Citrus clementina Ciclev10006752m.g I
Ciclev10018009m.g Citrus clementina Ciclev10018009m.g I
Ciclev10021161m.g Citrus clementina Ciclev10021161m.g I
Ciclev10027201m.g Citrus clementina Ciclev10027201m.g I
Cla011601 Citrullus lanatus Cla011601 I
Cla012793 Citrullus lanatus Cla012793 I
Cucsa.303440 Cucumis sativus Cucsa.303440 I
Cucsa.340960 Cucumis sativus Cucsa.340960 I
Eucgr.B00023 Eucalyptus grandis Eucgr.B00023 I
Eucgr.D01819 Eucalyptus grandis Eucgr.D01819 I
Eucgr.E04323 Eucalyptus grandis Eucgr.E04323 I
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I
Eucgr.I00442 Eucalyptus grandis Eucgr.I00442 I
evm.TU.supercontig_25.69 Carica papaya evm.TU.supercontig_25.69 I
e_gw1.317.17.1 Physcomitrella patens e_gw1.317.17.1 I
e_gw1.45.189.1 Physcomitrella patens e_gw1.45.189.1 I
F775_00835 Aegilops tauschii F775_00835 I
F775_17110 Aegilops tauschii F775_17110 I
F775_18488 Aegilops tauschii F775_18488 I
F775_28951 Aegilops tauschii F775_28951 I
gene06920-v1.0-hybrid Fragaria vesca gene06920-v1.0-hybrid I
gene19715-v1.0-hybrid Fragaria vesca gene19715-v1.0-hybrid I
gene19934-v1.0-hybrid Fragaria vesca gene19934-v1.0-hybrid I
gene31835-v1.0-hybrid Fragaria vesca gene31835-v1.0-hybrid I
gene31836-v1.0-hybrid Fragaria vesca gene31836-v1.0-hybrid I
GLYMA01G43120 Glycine max GLYMA01G43120 I
GLYMA02G13770 Glycine max GLYMA02G13770 I
GLYMA04G11040 Glycine max GLYMA04G11040 I
GLYMA06G10840 Glycine max GLYMA06G10840 I
GLYMA07G01050 Glycine max GLYMA07G01050 I
GLYMA08G02080 Glycine max GLYMA08G02080 I
GLYMA08G17371 Glycine max GLYMA08G17371 I
GLYMA08G20440 Glycine max GLYMA08G20440 I
GLYMA11G02400 Glycine max GLYMA11G02400 I
GLYMA13G42431 Glycine max GLYMA13G42431 I
GLYMA15G02955 Glycine max GLYMA15G02955 I
GLYMA15G41810 Glycine max GLYMA15G41810 I
Gorai.003G155400 Gossypium raimondii Gorai.003G155400 I
Gorai.004G138300 Gossypium raimondii Gorai.004G138300 I
Gorai.004G268300 Gossypium raimondii Gorai.004G268300 I
Gorai.009G142200 Gossypium raimondii Gorai.009G142200 I
Gorai.011G063900 Gossypium raimondii Gorai.011G063900 I
GRMZM2G064744 Zea mays GRMZM2G064744 I
GRMZM2G088783 Zea mays GRMZM2G088783 I
GRMZM2G147698 Zea mays GRMZM2G147698 I
GRMZM2G172327 Zea mays GRMZM2G172327 I
GRMZM2G325907 Zea mays GRMZM2G325907 I
GSMUA_Achr10G08070_001 Musa acuminata GSMUA_Achr10G08070_001 I
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I
GSMUA_Achr11G00430_001 Musa acuminata GSMUA_Achr11G00430_001 I
GSMUA_Achr1G25120_001 Musa acuminata GSMUA_Achr1G25120_001 I
GSMUA_Achr2G18440_001 Musa acuminata GSMUA_Achr2G18440_001 I
GSMUA_Achr5G18080_001 Musa acuminata GSMUA_Achr5G18080_001 I
GSMUA_Achr5G18400_001 Musa acuminata GSMUA_Achr5G18400_001 I
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I
GSMUA_Achr7G17250_001 Musa acuminata GSMUA_Achr7G17250_001 I
GSMUA_Achr8G03510_001 Musa acuminata GSMUA_Achr8G03510_001 I
GSMUA_Achr8G18730_001 Musa acuminata GSMUA_Achr8G18730_001 I
GSMUA_Achr9G11190_001 Musa acuminata GSMUA_Achr9G11190_001 I
GSMUA_Achr9G25110_001 Musa acuminata GSMUA_Achr9G25110_001 I
LjT35F06.10.nd Lotus japonicus LjT35F06.10.nd I
LPERR01G24370 Leersia perrieri LPERR01G24370 I
LPERR06G07150 Leersia perrieri LPERR06G07150 I
LPERR07G12760 Leersia perrieri LPERR07G12760 I
LPERR07G20400 Leersia perrieri LPERR07G20400 I
LPERR08G03020 Leersia perrieri LPERR08G03020 I
Lus10015608.g Linum usitatissimum Lus10015608.g I
Lus10024669.g Linum usitatissimum Lus10024669.g I
Lus10032298.g Linum usitatissimum Lus10032298.g I
Lus10038395.g Linum usitatissimum Lus10038395.g I
MDP0000148894 Malus domestica MDP0000148894 I
MDP0000157506 Malus domestica MDP0000157506 I
MDP0000158937 Malus domestica MDP0000158937 I
MDP0000226667 Malus domestica MDP0000226667 I
MDP0000263595 Malus domestica MDP0000263595 I
mgf024107m Mimulus guttatus mgf024107m I
mgf026023m Mimulus guttatus mgf026023m I
MLOC_16981 Hordeum vulgare MLOC_16981 I
MLOC_18177 Hordeum vulgare MLOC_18177 I
MLOC_37780 Hordeum vulgare MLOC_37780 I
MLOC_56753 Hordeum vulgare MLOC_56753 I
MTR_2g064160 Medicago truncatula MTR_2g064160 I
MTR_2g099740 Medicago truncatula MTR_2g099740 I
MTR_3g074520 Medicago truncatula MTR_3g074520 I
MTR_5g010020 Medicago truncatula MTR_5g010020 I
MTR_8g017340 Medicago truncatula MTR_8g017340 I
MTR_8g017350 Medicago truncatula MTR_8g017350 I
MTR_8g017390 Medicago truncatula MTR_8g017390 I
MTR_8g017440 Medicago truncatula MTR_8g017440 I
MTR_8g017500 Medicago truncatula MTR_8g017500 I
MTR_8g017540 Medicago truncatula MTR_8g017540 I
MTR_8g098860 Medicago truncatula MTR_8g098860 I
MYB26 Arabidopsis thaliana AT3G13890 I
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I
MYB26 Populus trichocarpa POPTR_0001s20370 I
MYB26 Vitis vinifera VIT_09s0002g01670 I
OB01G37410 Oryza brachyantha OB01G37410 I
OB06G17320 Oryza brachyantha OB06G17320 I
OB07G21090 Oryza brachyantha OB07G21090 I
OB08G13090 Oryza brachyantha OB08G13090 I
OBART07G15150 Oryza barthii OBART07G15150 I
OBART08G03020 Oryza barthii OBART08G03020 I
OBART12G13720 Oryza barthii OBART12G13720 I
OGLUM07G23470 Oryza glumaepatula OGLUM07G23470 I
OGLUM08G03030 Oryza glumaepatula OGLUM08G03030 I
OGLUM12G15400 Oryza glumaepatula OGLUM12G15400 I
OLONG_008660 Oryza longistaminata OLONG_008660 I
OMERI03G17220 Oryza meridionalis OMERI03G17220 I
OMERI07G11910 Oryza meridionalis OMERI07G11910 I
OMERI07G19830 Oryza meridionalis OMERI07G19830 I
OMERI08G02950 Oryza meridionalis OMERI08G02950 I
OMERI12G09660 Oryza meridionalis OMERI12G09660 I
ONIVA02G07540 Oryza nivara ONIVA02G07540 I
ONIVA05G29400 Oryza nivara ONIVA05G29400 I
ONIVA06G02400 Oryza nivara ONIVA06G02400 I
OPUNC01G19230 Oryza punctata OPUNC01G19230 I
OPUNC01G28160 Oryza punctata OPUNC01G28160 I
OPUNC07G13970 Oryza punctata OPUNC07G13970 I
OPUNC07G22080 Oryza punctata OPUNC07G22080 I
OPUNC08G02760 Oryza punctata OPUNC08G02760 I
OPUNC12G12380 Oryza punctata OPUNC12G12380 I
orange1.1g020613m.g Citrus sinensis orange1.1g020613m.g I
orange1.1g036087m.g Citrus sinensis orange1.1g036087m.g I
orange1.1g039070m.g Citrus sinensis orange1.1g039070m.g I
orange1.1g043612m.g Citrus sinensis orange1.1g043612m.g I
ORGLA01G0234600 Oryza glaberrima ORGLA01G0234600 I
ORGLA07G0124200 Oryza glaberrima ORGLA07G0124200 I
ORGLA07G0264800 Oryza glaberrima ORGLA07G0264800 I
ORGLA08G0023900 Oryza glaberrima ORGLA08G0023900 I
ORGLA12G0120900 Oryza glaberrima ORGLA12G0120900 I
ORUFI07G15620 Oryza rufipogon ORUFI07G15620 I
ORUFI07G24600 Oryza rufipogon ORUFI07G24600 I
ORUFI08G03380 Oryza rufipogon ORUFI08G03380 I
ORUFI12G15040 Oryza rufipogon ORUFI12G15040 I
OS01G0709000 Oryza sativa OS01G0709000 I
OS07G0497500 Oryza sativa OS07G0497500 I
OS08G0151300 Oryza sativa OS08G0151300 I
Pavir.Ba00923 Panicum virgatum Pavir.Ba00923 I
Pavir.Bb02786 Panicum virgatum Pavir.Bb02786 I
Pavir.Ca02370 Panicum virgatum Pavir.Ca02370 I
Pavir.Ea02594 Panicum virgatum Pavir.Ea02594 I
Pavir.Fb00364 Panicum virgatum Pavir.Fb00364 I
Pavir.J03230 Panicum virgatum Pavir.J03230 I
Pavir.J18139 Panicum virgatum Pavir.J18139 I
Pavir.J20716 Panicum virgatum Pavir.J20716 I
Pavir.J21520 Panicum virgatum Pavir.J21520 I
Pavir.J29561 Panicum virgatum Pavir.J29561 I
PDK_20s1854611g001 Phoenix dactylifera PDK_20s1854611g001 I
PGSC0003DMG400000027 Solanum tuberosum PGSC0003DMG400000027 I
PGSC0003DMG400007325 Solanum tuberosum PGSC0003DMG400007325 I
PGSC0003DMG400037038 Solanum tuberosum PGSC0003DMG400037038 I
PK02515.1 Cannabis sativa PK02515.1 I
PK22855.1 Cannabis sativa PK22855.1 I
PK29171.1 Cannabis sativa PK29171.1 I
Pm010847 Prunus mume Pm010847 I
Pm013322 Prunus mume Pm013322 I
Pm023937 Prunus mume Pm023937 I
Pm023938 Prunus mume Pm023938 I
POPTR_0001s09810 Populus trichocarpa POPTR_0001s09810 I
POPTR_0001s12240 Populus trichocarpa POPTR_0001s12240 I
POPTR_0003s13190 Populus trichocarpa POPTR_0003s13190 I
POPTR_0003s15440 Populus trichocarpa POPTR_0003s15440 I
POPTR_0008s08110 Populus trichocarpa POPTR_0008s08110 I
POPTR_0010s18170 Populus trichocarpa POPTR_0010s18170 I
PRUPE_ppa015032mg Prunus persica PRUPE_ppa015032mg I
PRUPE_ppa016196mg Prunus persica PRUPE_ppa016196mg I
PRUPE_ppa019529mg Prunus persica PRUPE_ppa019529mg I
PRUPE_ppa022859mg Prunus persica PRUPE_ppa022859mg I
PRUPE_ppa026618mg Prunus persica PRUPE_ppa026618mg I
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I
SapurV1A.0098s0320 Salix purpurea SapurV1A.0098s0320 I
SapurV1A.0119s0140 Salix purpurea SapurV1A.0119s0140 I
SapurV1A.0122s0490 Salix purpurea SapurV1A.0122s0490 I
SapurV1A.0149s0490 Salix purpurea SapurV1A.0149s0490 I
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I
SapurV1A.0236s0090 Salix purpurea SapurV1A.0236s0090 I
SapurV1A.0538s0150 Salix purpurea SapurV1A.0538s0150 I
SapurV1A.1869s0040 Salix purpurea SapurV1A.1869s0040 I
SapurV1A.4138s0010 Salix purpurea SapurV1A.4138s0010 I
Sb01g034270 Sorghum bicolor Sb01g034270 I
Sb02g033830 Sorghum bicolor Sb02g033830 I
Sb03g024500 Sorghum bicolor Sb03g024500 I
Sb03g032600 Sorghum bicolor Sb03g032600 I
Sb07g003320 Sorghum bicolor Sb07g003320 I
Sb09g027200 Sorghum bicolor Sb09g027200 I
Si002319m.g Setaria italica Si002319m.g I
Si024786m.g Setaria italica Si024786m.g I
Si029872m.g Setaria italica Si029872m.g I
Si030152m.g Setaria italica Si030152m.g I
Si036638m.g Setaria italica Si036638m.g I
Solyc01g094360.2 Solanum lycopersicum Solyc01g094360.2 I
Solyc02g082040.2 Solanum lycopersicum Solyc02g082040.2 I
Solyc03g121740.1 Solanum lycopersicum Solyc03g121740.1 I
Solyc04g056310.2 Solanum lycopersicum Solyc04g056310.2 I
Solyc10g005240.2 Solanum lycopersicum Solyc10g005240.2 I
TCM_005977 Theobroma cacao TCM_005977 I
TCM_016332 Theobroma cacao TCM_016332 I
TCM_029065 Theobroma cacao TCM_029065 I
TCM_033645 Theobroma cacao TCM_033645 I
Thhalv10021042m.g Eutrema salsugineum Thhalv10021042m.g I
Thhalv10022066m.g Eutrema salsugineum Thhalv10022066m.g I
Thhalv10023948m.g Eutrema salsugineum Thhalv10023948m.g I
Traes_2AS_40FA27AE7 Triticum aestivum Traes_2AS_40FA27AE7 I
Traes_2BS_CA02DC5B2 Triticum aestivum Traes_2BS_CA02DC5B2 I
Traes_3AL_E3BF20F0D Triticum aestivum Traes_3AL_E3BF20F0D I
Traes_7AL_04D939077 Triticum aestivum Traes_7AL_04D939077 I
Traes_7AL_0BCF482E8 Triticum aestivum Traes_7AL_0BCF482E8 I
Traes_7DL_5BD0D4BD1 Triticum aestivum Traes_7DL_5BD0D4BD1 I
Traes_7DL_AD4395F8F Triticum aestivum Traes_7DL_AD4395F8F I
TRIUR3_20789 Triticum urartu TRIUR3_20789 I
TRIUR3_24104 Triticum urartu TRIUR3_24104 I
TRIUR3_25230 Triticum urartu TRIUR3_25230 I
TRIUR3_26358 Triticum urartu TRIUR3_26358 I
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I
VIT_05s0020g01100 Vitis vinifera VIT_05s0020g01100 I