PGSC0003DMG402006783 (Solanum tuberosum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 PGSC0003DMG402006783 T323945_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400017455 Sigma 70 40 110
PGSC0003DMT400017456 Sigma 70 40 110

Links

Other Sigma 70 family TFs
Other Solanum tuberosum TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00805 Aquilegia coerulea Aquca_014_00805 N 0.817
Bo2g011520 Brassica oleracea Bo2g011520 N 0.732
Bo9g166510 Brassica oleracea Bo9g166510 N 0.732
Bostr.2902s0107 Boechera stricta Bostr.2902s0107 N 0.732
Bra008807 Brassica rapa Bra008807 N 0.732
Bra023430 Brassica rapa Bra023430 N 0.732
Cagra.0596s0063 Capsella grandiflora Cagra.0596s0063 N 0.732
Carubv10001054m.g Capsella rubella Carubv10001054m.g N 0.732
Ciclev10033747m.g Citrus clementina Ciclev10033747m.g N 0.761
Cucsa.248920 Cucumis sativus Cucsa.248920 N 0.704
evm.TU.supercontig_125.39 Carica papaya evm.TU.supercontig_125.39 N 0.718
gene29494-v1.0-hybrid Fragaria vesca gene29494-v1.0-hybrid N 0.803
MDP0000235160 Malus domestica MDP0000235160 N 0.718
MDP0000266956 Malus domestica MDP0000266956 N 0.704
mgf003626m Mimulus guttatus mgf003626m N 0.775
orange1.1g046578m.g Citrus sinensis orange1.1g046578m.g N 0.775
PDK_20s1385451g001 Phoenix dactylifera PDK_20s1385451g001 N 0.732
Pm016510 Prunus mume Pm016510 N 0.761
PRUPE_ppa017025mg Prunus persica PRUPE_ppa017025mg N 0.761
SIG4 Vitis vinifera VIT_13s0064g00190 N 0.775
SIGD Arabidopsis thaliana AT5G13730 N 0.732
Solyc01g087690.1 Solanum lycopersicum Solyc01g087690.1 N 1.000
Thhalv10013654m.g Eutrema salsugineum Thhalv10013654m.g N 0.732