Afo_R010787 (Aptenodytes forsteri)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Afo_R010787 T325258_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFIB
M03479_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIB_1 		0.989 0.989
NFIB
M05747_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX 		0.989 0.989
Nfib
M09381_2.00 		Mus musculus
BVWGCCARV
BYTGGCWBV		 Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C 		0.989 0.989
NFIB
M11280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6_01 		0.989 0.989
NFIB
M11281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1B_Q6 		0.989 0.989
NFIB
M05748_2.00 		Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN		 SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX 		0.989 0.989
NFIA
M03480_2.00 		Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR		 SELEX
Jolma et al.(2013)
NFIA_1 		0.923 0.923
NFIA
M03481_2.00 		Homo sapiens
NNTGCCAANN
NNTTGGCANN		 SELEX
Jolma et al.(2013)
NFIA_2 		0.923 0.923
NFIA
M09379_2.00 		Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C 		0.923 0.923
Nfia
M09383_2.00 		Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR		 Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C 		0.923 0.923
NFIA
M11282_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1A_Q6_01 		0.923 0.923
Nfia
M11291_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFIA_02 		0.923 0.923
NFIX
M03475_2.00 		Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR		 SELEX
Jolma et al.(2013)
NFIX_1 		0.912 0.912
NFIX
M03476_2.00 		Homo sapiens
NYTGGCDNN
NNHGCCARN		 SELEX
Jolma et al.(2013)
NFIX_2 		0.912 0.912
NFIX
M03477_2.00 		Homo sapiens
NYTGGCWNN
NNWGCCARN		 SELEX
Jolma et al.(2013)
NFIX_3 		0.912 0.912
NFIX
M03478_2.00 		Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA		 SELEX
Jolma et al.(2013)
NFIX_4 		0.912 0.912
NFIX
M05741_2.00 		Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN		 SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX 		0.912 0.912
NFIX
M05742_2.00 		Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN		 SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX 		0.912 0.912
Nfic
M09385_2.00 		Mus musculus
NBYTGGCWN
NWGCCARVN		 Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A 		0.813 0.813
NFIC
M05745_2.00 		Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN		 SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX 		0.802 0.802
NFIC
M08164_2.00 		Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN		 ChIP-seq
Mathelier et al.(2014)
MA0161.2 		0.802 0.802
NFIC
M09378_2.00 		Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV		 Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A 		0.802 0.802
NFIC
M09635_2.00 		Homo sapiens
BYTGSCAV
BTGSCARV		 Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished 		0.802 0.802
NFIC
M09636_2.00 		Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV		 Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished 		0.802 0.802
NFIC
M11278_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CTF1_01 		0.802 0.802
NFIC
M11279_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NF1C_Q6 		0.802 0.802
NFIC
M05746_2.00 		Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN		 SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX 		0.802 0.802
NfI
M03968_2.00 		Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR		 SELEX
Nitta et al.(2015)
NfI_1 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R010787 SMAD 60 164

Links

Other SMAD family TFs
Other Aptenodytes forsteri TFs

331 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29742.m001400 Ricinus communis 29742.m001400 I 0.000
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.000
Bo5g002600 Brassica oleracea Bo5g002600 I 0.000
Bo8g117810 Brassica oleracea Bo8g117810 I 0.000
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.000
Bra032630 Brassica rapa Bra032630 I 0.000
Bra033274 Brassica rapa Bra033274 I 0.000
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.000
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.000
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.000
Ca_01325 Cicer arietinum Ca_01325 I 0.000
Ca_17638 Cicer arietinum Ca_17638 I 0.000
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.000
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.000
Cla012665 Citrullus lanatus Cla012665 I 0.000
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.000
ERF023 Arabidopsis thaliana AT1G01250 D 0.000
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.000
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.000
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.000
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.000
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.000
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.000
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.000
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.000
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.000
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.000
mgf020568m Mimulus guttatus mgf020568m I 0.000
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.000
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.000
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.000
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N 0.000
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.000
PK15554.1 Cannabis sativa PK15554.1 I 0.000
Pm018354 Prunus mume Pm018354 I 0.000
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.000
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.000
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.000
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.000
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.000
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.000
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.000
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.000
TCM_005130 Theobroma cacao TCM_005130 I 0.000
TCM_036269 Theobroma cacao TCM_036269 I 0.000
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.000
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.000