chd4b (Danio rerio)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSDARG00000025789 T327842_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000124629 Sox 167 212

Links

Other Sox family TFs
Other Danio rerio TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29801.m003096 Ricinus communis 29801.m003096 I 0.000
29814.m000736 Ricinus communis 29814.m000736 I 0.000
29970.m000987 Ricinus communis 29970.m000987 I 0.000
30170.m013698 Ricinus communis 30170.m013698 I 0.000
30170.m013927 Ricinus communis 30170.m013927 I 0.000
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.000
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.000
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.000
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.000
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.000
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.000
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.000
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.000
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.000
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.000
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.000
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.000
Bo1g004900 Brassica oleracea Bo1g004900 I 0.000
Bo1g082480 Brassica oleracea Bo1g082480 I 0.000
Bo1g144680 Brassica oleracea Bo1g144680 I 0.000
Bo2g167960 Brassica oleracea Bo2g167960 I 0.000
Bo3g153550 Brassica oleracea Bo3g153550 I 0.000
Bo4g025810 Brassica oleracea Bo4g025810 I 0.000
Bo4g151410 Brassica oleracea Bo4g151410 I 0.000
Bo7g063830 Brassica oleracea Bo7g063830 I 0.000
Bo7g099180 Brassica oleracea Bo7g099180 I 0.000
Bo7g118450 Brassica oleracea Bo7g118450 I 0.000
Bo8g079430 Brassica oleracea Bo8g079430 I 0.000
Bo8g090160 Brassica oleracea Bo8g090160 I 0.000
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.000
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.000
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.000
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.000
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.000
Bostr.6864s0236 Boechera stricta Bostr.6864s0236 I 0.000
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.000
Bra001323 Brassica rapa Bra001323 I 0.000
Bra005006 Brassica rapa Bra005006 I 0.000
Bra007186 Brassica rapa Bra007186 I 0.000
Bra010593 Brassica rapa Bra010593 I 0.000
Bra011749 Brassica rapa Bra011749 I 0.000
Bra012149 Brassica rapa Bra012149 I 0.000
Bra012910 Brassica rapa Bra012910 I 0.000
Bra017813 Brassica rapa Bra017813 I 0.000
Bra029990 Brassica rapa Bra029990 I 0.000
Bra032176 Brassica rapa Bra032176 I 0.000
Bra034057 Brassica rapa Bra034057 I 0.000
Bra036048 Brassica rapa Bra036048 I 0.000
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.000
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.000
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.000
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.000
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.000
Cagra.1549s0005 Capsella grandiflora Cagra.1549s0005 I 0.000
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.000
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.000
Carubv10019440m.g Capsella rubella Carubv10019440m.g I 0.000
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.000
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.000
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.000
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.000
cassava16103.m1 Manihot esculenta cassava16103.m1 I 0.000
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.000
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.000
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.000
cassava46434.m1 Manihot esculenta cassava46434.m1 I 0.000
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.000
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.000
Ca_01522 Cicer arietinum Ca_01522 I 0.000
Ca_02182 Cicer arietinum Ca_02182 I 0.000
Ca_12468 Cicer arietinum Ca_12468 I 0.000
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.000
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.000
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I 0.000
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.000
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I 0.000
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.000
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.000
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.000
Cla004431 Citrullus lanatus Cla004431 I 0.000
Cla014191 Citrullus lanatus Cla014191 I 0.000
Cla020946 Citrullus lanatus Cla020946 I 0.000
Cla022947 Citrullus lanatus Cla022947 I 0.000
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.000
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.000
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.000
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.000
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.000
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.000
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.000
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.000
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.000
Eucgr.J00189 Eucalyptus grandis Eucgr.J00189 I 0.000
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.000
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.000
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I 0.000
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I 0.000
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.000
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.000
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.000
F3A4.140 Arabidopsis thaliana AT3G50060 D 0.000
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.000
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.000
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.000
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.000
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.000
GLYMA04G03910 Glycine max GLYMA04G03910 I 0.000
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.000
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.000
GLYMA06G04010 Glycine max GLYMA06G04010 I 0.000
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.000
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.000
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.000
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.000
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.000
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.000
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.000
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I 0.000
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.000
Gorai.009G275100 Gossypium raimondii Gorai.009G275100 I 0.000
Gorai.009G276400 Gossypium raimondii Gorai.009G276400 I 0.000
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.000
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.000
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.000
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.000
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.000
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.000
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.000
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.000
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.000
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.000
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.000
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.000
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.000
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.000
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I 0.000
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.000
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.000
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.000
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.000
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.000
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.000
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.000
Lus10010055.g Linum usitatissimum Lus10010055.g I 0.000
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.000
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.000
Lus10021762.g Linum usitatissimum Lus10021762.g I 0.000
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.000
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.000
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.000
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.000
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.000
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.000
MDP0000187872 Malus domestica MDP0000187872 I 0.000
MDP0000196986 Malus domestica MDP0000196986 I 0.000
MDP0000232454 Malus domestica MDP0000232454 I 0.000
MDP0000275800 Malus domestica MDP0000275800 I 0.000
MDP0000298689 Malus domestica MDP0000298689 I 0.000
MDP0000463846 Malus domestica MDP0000463846 I 0.000
MDP0000477900 Malus domestica MDP0000477900 I 0.000
MDP0000480596 Malus domestica MDP0000480596 I 0.000
MDP0000641708 Malus domestica MDP0000641708 I 0.000
MDP0000784297 Malus domestica MDP0000784297 I 0.000
MDP0000823270 Malus domestica MDP0000823270 I 0.000
MDP0000894463 Malus domestica MDP0000894463 I 0.000
mgf002573m Mimulus guttatus mgf002573m I 0.000
mgf014089m Mimulus guttatus mgf014089m I 0.000
mgf020432m Mimulus guttatus mgf020432m I 0.000
mgf023922m Mimulus guttatus mgf023922m I 0.000
mgf025567m Mimulus guttatus mgf025567m I 0.000
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.000
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.000
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.000
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.000
MYB109 Arabidopsis thaliana AT3G55730 I 0.000
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.000
MYB25 Arabidopsis thaliana AT2G39880 I 0.000
MYB44 Arabidopsis thaliana AT5G67300 D 0.000
MYB73 Arabidopsis thaliana AT4G37260 D 0.000
MYB77 Arabidopsis lyrata fgenesh2_kg.5__1356__AT3G50060.1 I 0.000
OB01G46120 Oryza brachyantha OB01G46120 I 0.000
OB09G10200 Oryza brachyantha OB09G10200 I 0.000
OBART01G37390 Oryza barthii OBART01G37390 I 0.000
OBART09G00310 Oryza barthii OBART09G00310 I 0.000
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.000
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.000
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.000
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.000
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.000
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.000
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.000
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.000
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.000
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.000
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.000
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I 0.000
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.000
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.000
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.000
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.000
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.000
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.000
OS01G0850400 Oryza sativa OS01G0850400 I 0.000
OS09G0106700 Oryza sativa OS09G0106700 I 0.000
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.000
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.000
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.000
PK01153.1 Cannabis sativa PK01153.1 I 0.000
PK07741.1 Cannabis sativa PK07741.1 D 0.000
PK12959.1 Cannabis sativa PK12959.1 I 0.000
PK16550.1 Cannabis sativa PK16550.1 I 0.000
PK17282.1 Cannabis sativa PK17282.1 I 0.000
PK28565.1 Cannabis sativa PK28565.1 D 0.000
Pm005220 Prunus mume Pm005220 I 0.000
Pm005332 Prunus mume Pm005332 I 0.000
Pm018951 Prunus mume Pm018951 I 0.000
Pm021211 Prunus mume Pm021211 I 0.000
POPTR_0001s30750 Populus trichocarpa POPTR_0001s30750 I 0.000
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.000
POPTR_0002s13030 Populus trichocarpa POPTR_0002s13030 I 0.000
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.000
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.000
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.000
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.000
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.000
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I 0.000
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.000
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I 0.000
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.000
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I 0.000
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.000
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I 0.000
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.000
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.000
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.000
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.000
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.000
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.000
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.000
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.000
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.000
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.000
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.000
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.000
Si032789m.g Setaria italica Si032789m.g I 0.000
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.000
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.000
TCM_000696 Theobroma cacao TCM_000696 I 0.000
TCM_007138 Theobroma cacao TCM_007138 I 0.000
TCM_042474 Theobroma cacao TCM_042474 I 0.000
TCM_042629 Theobroma cacao TCM_042629 I 0.000
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.000
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.000
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.000
Thhalv10010581m.g Eutrema salsugineum Thhalv10010581m.g I 0.000
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.000
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.000
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.000
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.000
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.000
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.000
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.000
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.000
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.000
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.000