Alligator_sinensis_CCG007907.1 (Alligator sinensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Alligator_sinensis_CCG007907.1 T333561_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG007907.1 Sox 1 45
Alligator_sinensis_CCG007907.1 Sox 61 127

Links

Other Sox family TFs
Other Alligator sinensis TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AABR07019870.1 Rattus norvegicus ENSRNOG00000038033 N 0.441
AABR07025074.1 Rattus norvegicus ENSRNOG00000032550 N 0.418
AABR07040430.1 Rattus norvegicus ENSRNOG00000056486 N 0.460
AC135696.1 Rattus norvegicus ENSRNOG00000058908 N 0.442
AFAF009984 Anopheles farauti AFAF009984 N 0.451
ENSBTAG00000005098 Bos taurus ENSBTAG00000005098 N 0.418
ENSBTAG00000020685 Bos taurus ENSBTAG00000020685 N 0.595
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.422
ENSBTAP00000049034-D1 Bos grunniens ENSBTAP00000049034-D1 N 0.418
ENSBTAP00000049357-D1 Bos grunniens ENSBTAP00000049357-D1 N 0.462
ENSCJAG00000007419 Callithrix jacchus ENSCJAG00000007419 N 0.415
ENSCJAG00000008378 Callithrix jacchus ENSCJAG00000008378 N 0.438
ENSCJAG00000008384 Callithrix jacchus ENSCJAG00000008384 N 0.436
ENSCJAG00000011146 Callithrix jacchus ENSCJAG00000011146 N 0.432
ENSCJAG00000014214 Callithrix jacchus ENSCJAG00000014214 N 0.420
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N 0.439
ENSCJAG00000033322 Callithrix jacchus ENSCJAG00000033322 N 0.425
ENSCJAG00000033913 Callithrix jacchus ENSCJAG00000033913 N 0.502
ENSCPOG00000003985 Cavia porcellus ENSCPOG00000003985 N 0.442
ENSCSAG00000013078 Chlorocebus sabaeus ENSCSAG00000013078 N 0.425
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N 0.439
ENSDNOG00000034905 Dasypus novemcinctus ENSDNOG00000034905 N 0.420
ENSDNOG00000036626 Dasypus novemcinctus ENSDNOG00000036626 N 0.448
ENSDNOG00000046638 Dasypus novemcinctus ENSDNOG00000046638 N 0.431
ENSDNOG00000046844 Dasypus novemcinctus ENSDNOG00000046844 N 0.437
ENSECAG00000003655 Equus caballus ENSECAG00000003655 N 0.423
ENSECAG00000005186 Equus caballus ENSECAG00000005186 N 0.442
ENSETEG00000009246 Echinops telfairi ENSETEG00000009246 N 0.449
ENSETEG00000013458 Echinops telfairi ENSETEG00000013458 N 0.439
ENSETEG00000016379 Echinops telfairi ENSETEG00000016379 N 0.517
ENSFCAG00000028961 Felis catus ENSFCAG00000028961 N 0.419
ENSMEUG00000011289 Macropus eugenii ENSMEUG00000011289 N 0.433
ENSMICG00000016224 Microcebus murinus ENSMICG00000016224 N 0.416
ENSMMUG00000001275 Macaca mulatta ENSMMUG00000001275 N 0.442
ENSMMUG00000013266 Macaca mulatta ENSMMUG00000013266 N 0.463
ENSMMUG00000018606 Macaca mulatta ENSMMUG00000018606 N 0.545
ENSMMUP00000017448 Macaca fascicularis ENSMMUP00000017448 N 0.463
ENSMODG00000009238 Monodelphis domestica ENSMODG00000009238 N 0.442
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.429
ENSMPUG00000020113 Mustela putorius furo ENSMPUG00000020113 N 0.415
ENSOARG00000005357 Ovis aries ENSOARG00000005357 N 0.577
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.477
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N 0.416
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.477
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.477
ENSOARG00000017078 Ovis aries ENSOARG00000017078 N 0.442
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.442
ENSOCUG00000016030 Oryctolagus cuniculus ENSOCUG00000016030 N 0.480
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.477
ENSOCUG00000023449 Oryctolagus cuniculus ENSOCUG00000023449 N 0.477
ENSOCUG00000027747 Oryctolagus cuniculus ENSOCUG00000027747 N 0.432
ENSOGAG00000027410 Otolemur garnettii ENSOGAG00000027410 N 0.476
ENSOGAG00000028007 Otolemur garnettii ENSOGAG00000028007 N 0.420
ENSOGAG00000028411 Otolemur garnettii ENSOGAG00000028411 N 0.416
ENSOGAG00000029748 Otolemur garnettii ENSOGAG00000029748 N 0.430
ENSOGAG00000030052 Otolemur garnettii ENSOGAG00000030052 N 0.463
ENSOGAG00000032152 Otolemur garnettii ENSOGAG00000032152 N 0.434
ENSOGAG00000032240 Otolemur garnettii ENSOGAG00000032240 N 0.436
ENSOGAG00000033437 Otolemur garnettii ENSOGAG00000033437 N 0.422
ENSOGAG00000033550 Otolemur garnettii ENSOGAG00000033550 N 0.566
ENSONIG00000005505 Oreochromis niloticus ENSONIG00000005505 N 0.441
ENSONIG00000019935 Oreochromis niloticus ENSONIG00000019935 N 0.419
ENSPANG00000005029 Papio anubis ENSPANG00000005029 N 0.442
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.477
ENSPANG00000011105 Papio anubis ENSPANG00000011105 N 0.442
ENSPANG00000011772 Papio anubis ENSPANG00000011772 N 0.469
ENSPFOG00000004533 Poecilia formosa ENSPFOG00000004533 N 0.435
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.434
ENSPPYG00000011668 Pongo abelii ENSPPYG00000011668 N 0.435
ENSPTRG00000013662 Pan troglodytes ENSPTRG00000013662 N 0.442
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.429
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.429
ENSSTOG00000000443 Ictidomys tridecemlineatus ENSSTOG00000000443 N 0.442
ENSSTOG00000012404 Ictidomys tridecemlineatus ENSSTOG00000012404 N 0.430
ENSTBEG00000005874 Tupaia belangeri ENSTBEG00000005874 N 0.429
ENSTBEG00000009427 Tupaia belangeri ENSTBEG00000009427 N 0.417
ENSTGUG00000006267 Taeniopygia guttata ENSTGUG00000006267 N 0.567
ENSTSYG00000003868 Tarsius syrichta ENSTSYG00000003868 N 0.420
ENSXMAG00000006844 Xiphophorus maculatus ENSXMAG00000006844 N 0.435
Gfo_R010508 Geospiza fortis Gfo_R010508 N 0.565
Hmg1l1 Rattus norvegicus ENSRNOG00000034130 N 0.442
Hmg1l1 Rattus norvegicus ENSRNOG00000051482 N 0.442
HMGB1 Bos taurus ENSBTAG00000014862 N 0.442
HMGB1 Microcebus murinus ENSMICG00000006213 N 0.442
HMGB1 Monodelphis domestica ENSMODG00000004443 N 0.417
HMGB1 Tupaia belangeri ENSTBEG00000013046 N 0.530
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.417
hmgb1b Takifugu rubripes ENSTRUG00000004822 N 0.434
HMGB2 Macaca mulatta ENSMMUG00000020008 N 0.438
HMGB2 Ornithorhynchus anatinus ENSOANG00000029120 N 0.562
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.471
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.477
hmgb2.S Xenopus laevis XB-GENE-1000251 N 0.441
hmgb2a Danio rerio ENSDARG00000029722 N 0.437
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.471
HMGB3 Oryctolagus cuniculus ENSOCUG00000024959 N 0.421
LOC108350839 Rattus norvegicus ENSRNOG00000038437 N 0.442
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.429
MESCA001453 Megaselia scalaris MESCA001453 N 0.426
Myotis_brandtii_Hmgb1_10003213 Myotis brandtii Myotis_brandtii_Hmgb1_10003213 N 0.474
Myotis_brandtii_Hmgb1_10026956 Myotis brandtii Myotis_brandtii_Hmgb1_10026956 N 0.462
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.472
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.471