nAv.1.0.1.g03900 (Acanthocheilonema viteae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 nAv.1.0.1.g03900 T336637_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
nAv.1.0.1.t03900-RA Sox 38 106

Links

Other Sox family TFs
Other Acanthocheilonema viteae TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC050 Arabidopsis thaliana AT3G10480 D
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I
ANAC052 Arabidopsis thaliana AT3G10490 I
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I
BGIOSGA009316 Oryza indica BGIOSGA009316 I
BGIOSGA026481 Oryza indica BGIOSGA026481 I
Bo1g143840 Brassica oleracea Bo1g143840 I
Bo1g143850 Brassica oleracea Bo1g143850 I
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I
Bra001366 Brassica rapa Bra001366 I
Bra034118 Brassica rapa Bra034118 I
Bra034119 Brassica rapa Bra034119 I
BRADI3G12470 Brachypodium distachyon BRADI3G12470 I
BRADI3G56080 Brachypodium distachyon BRADI3G56080 I
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I
Cagra.9217s0020 Capsella grandiflora Cagra.9217s0020 I
Carubv10013564m.g Capsella rubella Carubv10013564m.g I
Carubv10013694m.g Capsella rubella Carubv10013694m.g I
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I
F775_27564 Aegilops tauschii F775_27564 I
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I
Gorai.011G234200 Gossypium raimondii Gorai.011G234200 I
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I
GRMZM2G113950 Zea mays GRMZM2G113950 I
GRMZM2G125777 Zea mays GRMZM2G125777 I
LPERR02G31180 Leersia perrieri LPERR02G31180 N
LPERR08G20450 Leersia perrieri LPERR08G20450 I
Lus10037939.g Linum usitatissimum Lus10037939.g I
Lus10038670.g Linum usitatissimum Lus10038670.g I
mgf000623m Mimulus guttatus mgf000623m I
mgf004743m Mimulus guttatus mgf004743m I
MTR_1g090720 Medicago truncatula MTR_1g090720 I
OB02G44540 Oryza brachyantha OB02G44540 I
OB08G30590 Oryza brachyantha OB08G30590 I
OBART02G37700 Oryza barthii OBART02G37700 I
OBART08G23760 Oryza barthii OBART08G23760 I
OGLUM02G38880 Oryza glumaepatula OGLUM02G38880 I
OGLUM08G25240 Oryza glumaepatula OGLUM08G25240 I
OLONG_023179 Oryza longistaminata OLONG_023179 I
OMERI08G18580 Oryza meridionalis OMERI08G18580 I
ONIVA02G40500 Oryza nivara ONIVA02G40500 I
ONIVA08G26810 Oryza nivara ONIVA08G26810 I
OPUNC02G34910 Oryza punctata OPUNC02G34910 I
OPUNC08G21700 Oryza punctata OPUNC08G21700 I
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I
ORGLA02G0329400 Oryza glaberrima ORGLA02G0329400 I
ORGLA08G0191600 Oryza glaberrima ORGLA08G0191600 I
ORUFI02G39260 Oryza rufipogon ORUFI02G39260 I
ORUFI08G26250 Oryza rufipogon ORUFI08G26250 I
OS02G0822400 Oryza sativa OS02G0822400 I
OS08G0562200 Oryza sativa OS08G0562200 I
Pavir.Aa00085 Panicum virgatum Pavir.Aa00085 I
Pavir.Ab03009 Panicum virgatum Pavir.Ab03009 I
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I
Pavir.Fb02407 Panicum virgatum Pavir.Fb02407 I
PGSC0003DMG402023373 Solanum tuberosum PGSC0003DMG402023373 I
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I
Sb04g037720 Sorghum bicolor Sb04g037720 I
Sb07g023900 Sorghum bicolor Sb07g023900 I
Si013361m.g Setaria italica Si013361m.g I
Si016620m.g Setaria italica Si016620m.g I
Solyc05g055470.2 Solanum lycopersicum Solyc05g055470.2 I
TCM_043357 Theobroma cacao TCM_043357 I
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I
Traes_6AL_8BA1FF8B2 Triticum aestivum Traes_6AL_8BA1FF8B2 I
Traes_7BL_FB5FAC1E8 Triticum aestivum Traes_7BL_FB5FAC1E8 I
Traes_7DS_9FBF54244 Triticum aestivum Traes_7DS_9FBF54244 I
TRIUR3_33524 Triticum urartu TRIUR3_33524 I
VIT_13s0019g05230 Vitis vinifera VIT_13s0019g05230 I
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I