ta (Gasterosteus aculeatus)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSGACG00000007637 T339909_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
T
M05809_2.00 		Homo sapiens
NANGTGYGAHWWNTVRCACCTN
NAGGTGYBANWWDTCRCACNTN		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_1 		0.801 0.875
T
M05810_2.00 		Homo sapiens
DTCRCAYVTABGTGYGAH
DTCRCACVTABRTGYGAH		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_2 		0.801 0.875
T
M09427_2.00 		Homo sapiens
BYNVCANNNVDGTGWKARDN
NHYTMWCACHBNNNTGBNRV		 Misc
Kulakovskiy et al.(2013)
BRAC_HUMAN.H11MO.0.A 		0.801 0.875
T
M11384_2.00 		Homo sapiens
MKHBTSACACSTAGGTGTGAAATK
MATTTCACACCTASGTGTSAVDMK		 Transfac
Matys et al.(2006)
V$BRACH_01 		0.801 0.875
T
M05811_2.00 		Homo sapiens
NABGTGYGAHWWNTVRCACSTN
NASGTGYBANWWDTCRCACVTN		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_1 		0.801 0.875
T
M05812_2.00 		Homo sapiens
DTMRCAYVTABGTGYKAH
DTMRCACVTABRTGYKAH		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_2 		0.801 0.875
T
M09431_2.00 		Mus musculus
VVNRAWTTSACASNYHDVTGBNMAN
NTKNVCABHDRNSTGTSAAWTYNBB		 Misc
Kulakovskiy et al.(2013)
BRAC_MOUSE.H11MO.0.B 		0.801 0.869
T
M09651_2.00 		Mus musculus
NYTVDCASNNNNSTGHBARNN
NNYTVDCASNNNNSTGHBARN		 Misc
Heinz et al.(2010)
Mesoendoderm-Brachyury_GSE54963 		0.801 0.869
TBX19
M03562_2.00 		Homo sapiens
NDTVRCACVTANGTGYKANN
NNTMRCACNTABGTGYBAHN		 SELEX
Jolma et al.(2013)
TBX19_1 		0.799 0.807
TBX19
M05803_2.00 		Homo sapiens
NAGGTGYBAHWDTMRCACNTN
NANGTGYKAHWDTVRCACCTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX 		0.799 0.807
TBX19
M05804_2.00 		Homo sapiens
NANGTGYKAHWDTVRCACSTN
NASGTGYBAHWDTMRCACNTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX 		0.799 0.807
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000010151 T-box 45 220

Links

Other T-box family TFs
Other Gasterosteus aculeatus TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
1XBR_A Xenopus laevis 1XBR_A I 0.778
1XBR_B Xenopus laevis 1XBR_B I 0.778
Aan_R012309 Calypte anna Aan_R012309 I 0.785
Afo_R013116 Aptenodytes forsteri Afo_R013116 I 0.778
Alligator_sinensis_CCG010779.1 Alligator sinensis Alligator_sinensis_CCG010779.1 I 0.778
Alligator_sinensis_CCG010961.2 Alligator sinensis Alligator_sinensis_CCG010961.2 I 0.830
Alligator_sinensis_CCG019781.1 Alligator sinensis Alligator_sinensis_CCG019781.1 I 0.779
BGIBMGA000322 Bombyx mori BGIBMGA000322 I 0.743
Brh_R012030 Buceros rhinoceros Brh_R012030 I 0.778
CapteG149486 Capitella teleta CapteG149486 N 0.737
Cflo_04209--XP_396427.2_APIME Camponotus floridanus Cflo_04209--XP_396427.2_APIME I 0.740
CGI_10018059 Crassostrea gigas CGI_10018059 I 0.798
CLEC002870 Cimex lectularius CLEC002870 I 0.739
Cmyd_10017804 Chelonia mydas Cmyd_10017804 I 0.801
Cmyd_10020966 Chelonia mydas Cmyd_10020966 I 0.781
DAPPUDRAFT_44582 Daphnia pulex DAPPUDRAFT_44582 I 0.790
ENSAMEG00000004326 Ailuropoda melanoleuca ENSAMEG00000004326 I 0.796
ENSAMXG00000003991 Astyanax mexicanus ENSAMXG00000003991 I 0.805
ENSAMXG00000013638 Astyanax mexicanus ENSAMXG00000013638 I 0.917
ENSAPLG00000010506 Anas platyrhynchos ENSAPLG00000010506 I 0.778
ENSCSAG00000011055 Chlorocebus sabaeus ENSCSAG00000011055 I 0.799
ENSCSAG00000012200 Chlorocebus sabaeus ENSCSAG00000012200 I 0.801
ENSDNOG00000016178 Dasypus novemcinctus ENSDNOG00000016178 I 0.801
ENSFALG00000005706 Ficedula albicollis ENSFALG00000005706 I 0.778
ENSGMOG00000017391 Gadus morhua ENSGMOG00000017391 I 0.758
ENSGMOG00000018941 Gadus morhua ENSGMOG00000018941 I 0.920
ENSLACG00000011042 Latimeria chalumnae ENSLACG00000011042 I 0.862
ENSLACG00000015449 Latimeria chalumnae ENSLACG00000015449 I 0.827
ENSLOCG00000003838 Lepisosteus oculatus ENSLOCG00000003838 I 0.898
ENSLOCG00000010586 Lepisosteus oculatus ENSLOCG00000010586 I 0.829
ENSLOCG00000016526 Lepisosteus oculatus ENSLOCG00000016526 I 0.827
ENSMMUP00000022430 Macaca fascicularis ENSMMUP00000022430 I 0.801
ENSMPUG00000000522 Mustela putorius furo ENSMPUG00000000522 I 0.799
ENSNLEG00000011552 Nomascus leucogenys ENSNLEG00000011552 I 0.801
ENSNLEG00000014917 Nomascus leucogenys ENSNLEG00000014917 I 0.799
ENSOARG00000004863 Ovis aries ENSOARG00000004863 I 0.801
ENSOARG00000012617 Ovis aries ENSOARG00000012617 I 0.790
ENSONIG00000007611 Oreochromis niloticus ENSONIG00000007611 I 0.911
ENSONIG00000008985 Oreochromis niloticus ENSONIG00000008985 I 0.810
ENSONIG00000009906 Oreochromis niloticus ENSONIG00000009906 I 0.827
ENSP00000356795 Macaca fascicularis ENSP00000356795 I 0.799
ENSP00000356795-D1 Bos grunniens ENSP00000356795-D1 I 0.790
ENSPANG00000005068 Papio anubis ENSPANG00000005068 I 0.801
ENSPFOG00000002451 Poecilia formosa ENSPFOG00000002451 I 0.910
ENSPFOG00000006034 Poecilia formosa ENSPFOG00000006034 I 0.785
ENSPFOG00000016071 Poecilia formosa ENSPFOG00000016071 I 0.819
ENSPPYG00000017163 Pongo abelii ENSPPYG00000017163 I 0.801
ENSPSIG00000005649 Pelodiscus sinensis ENSPSIG00000005649 I 0.801
ENSPSIG00000015509 Pelodiscus sinensis ENSPSIG00000015509 I 0.781
ENSSHAG00000018904 Sarcophilus harrisii ENSSHAG00000018904 I 0.801
ENSSHAG00000018940 Sarcophilus harrisii ENSSHAG00000018940 I 0.799
ENSSTOG00000019913 Ictidomys tridecemlineatus ENSSTOG00000019913 I 0.799
ENSSTOG00000028238 Ictidomys tridecemlineatus ENSSTOG00000028238 I 0.801
ENSXMAG00000006226 Xiphophorus maculatus ENSXMAG00000006226 I 0.784
ENSXMAG00000011123 Xiphophorus maculatus ENSXMAG00000011123 I 0.837
ENSXMAG00000012033 Xiphophorus maculatus ENSXMAG00000012033 I 0.910
estExt_fgenesh2_pg.C_650149 Branchiostoma floridae estExt_fgenesh2_pg.C_650149 I 0.817
estExt_GenewiseH_1.C_9340011 Branchiostoma floridae estExt_GenewiseH_1.C_9340011 I 0.806
estExt_gwp.C_650221 Branchiostoma floridae estExt_gwp.C_650221 I 0.806
estExt_gwp.C_9340008 Branchiostoma floridae estExt_gwp.C_9340008 I 0.817
Gfo_R000170 Geospiza fortis Gfo_R000170 I 0.778
Hsal_03707--XP_396427.2_APIME Harpegnathos saltator Hsal_03707--XP_396427.2_APIME I 0.740
LotgiG154800 Lottia gigantea LotgiG154800 I 0.828
MCINX002868 Melitaea cinxia MCINX002868 I 0.743
me-t Oryzias latipes ENSORLG00000014067 I 0.911
Myotis_brandtii_TBX19_10024384 Myotis brandtii Myotis_brandtii_TBX19_10024384 I 0.799
NV14821 Nasonia vitripennis NV14821 I 0.740
Ogr19099 Ophisaurus gracilis Ogr19099 I 0.815
PHUM392580 Pediculus humanus PHUM392580 I 0.735
Pvit_02210 Pogona vitticeps Pvit_02210 I 0.778
Pvit_04554 Pogona vitticeps Pvit_04554 I 0.815
RPRC001186 Rhodnius prolixus RPRC001186 I 0.748
Sakowv30011577m.g Saccoglossus kowalevskii Sakowv30011577m.g I 0.779
SFT2D2 Macaca mulatta ENSMMUG00000005283 I 0.799
SNAPOd2T00000418001 Oikopleura dioica SNAPOd2T00000418001 I 0.743
SPU_013015 Strongylocentrotus purpuratus SPU_013015 N 0.786
T Anolis carolinensis ENSACAG00000003467 I 0.815
T Bos taurus ENSBTAG00000018681 I 0.801
T Canis familiaris ENSCAFG00000000807 I 0.806
T Callithrix jacchus ENSCJAG00000012508 I 0.801
T Cavia porcellus ENSCPOG00000001358 I 0.801
T Equus caballus ENSECAG00000007994 I 0.801
T Homo sapiens ENSG00000164458 D 0.801
T Gallus gallus ENSGALG00000011489 I 0.806
T Gorilla gorilla ENSGGOG00000007693 I 0.801
T Loxodonta africana ENSLAFG00000012505 I 0.801
T Macaca mulatta ENSMMUG00000017047 I 0.801
T Monodelphis domestica ENSMODG00000006318 I 0.801
T Mus musculus ENSMUSG00000062327 D 0.801
T Ornithorhynchus anatinus ENSOANG00000012289 I 0.806
T Oryctolagus cuniculus ENSOCUG00000000660 I 0.751
T Otolemur garnettii ENSOGAG00000007863 I 0.801
T Ochotona princeps ENSOPRG00000003376 I 0.799
T Pan troglodytes ENSPTRG00000018789 I 0.801
T Rattus norvegicus ENSRNOG00000012229 I 0.801
T Taeniopygia guttata ENSTGUG00000009448 I 0.806
T Tursiops truncatus ENSTTRG00000016665 I 0.801
t2 Xenopus tropicalis XB-GENE-5981736 I 0.799
t2.S Xenopus laevis XB-GENE-5981788 I 0.799
ta Danio rerio ENSDARG00000101576 I 0.920
ta Tetraodon nigroviridis ENSTNIG00000005634 I 0.883
ta Takifugu rubripes ENSTRUG00000012130 I 0.890
tb Danio rerio ENSDARG00000039806 I 0.825
tb Gasterosteus aculeatus ENSGACG00000005258 I 0.769
tb Oryzias latipes ENSORLG00000011262 I 0.816
tb Tetraodon nigroviridis ENSTNIG00000016613 I 0.809
tb Takifugu rubripes ENSTRUG00000011958 I 0.827
TBX19 Anolis carolinensis ENSACAG00000010693 I 0.778
TBX19 Bos taurus ENSBTAG00000002952 I 0.790
TBX19 Canis familiaris ENSCAFG00000015268 I 0.799
TBX19 Choloepus hoffmanni ENSCHOG00000010387 I 0.780
TBX19 Callithrix jacchus ENSCJAG00000016812 I 0.799
TBX19 Cavia porcellus ENSCPOG00000012456 I 0.799
tbx19 Danio rerio ENSDARG00000079187 I 0.813
TBX19 Dasypus novemcinctus ENSDNOG00000015810 I 0.789
Tbx19 Dipodomys ordii ENSDORG00000014860 I 0.785
TBX19 Equus caballus ENSECAG00000010186 I 0.799
TBX19 Felis catus ENSFCAG00000015047 I 0.799
TBX19 Homo sapiens ENSG00000143178 D 0.799
TBX19 Gallus gallus ENSGALG00000015244 I 0.778
TBX19 Gorilla gorilla ENSGGOG00000001338 I 0.799
TBX19 Loxodonta africana ENSLAFG00000011227 I 0.792
TBX19 Microcebus murinus ENSMICG00000007817 I 0.799
TBX19 Myotis lucifugus ENSMLUG00000011933 I 0.799
TBX19 Monodelphis domestica ENSMODG00000002921 I 0.777
Tbx19 Mus musculus ENSMUSG00000026572 I 0.799
TBX19 Oryctolagus cuniculus ENSOCUG00000014555 I 0.799
TBX19 Otolemur garnettii ENSOGAG00000004458 I 0.799
TBX19 Ochotona princeps ENSOPRG00000016564 I 0.794
TBX19 Pan troglodytes ENSPTRG00000001647 I 0.799
TBX19 Sus scrofa ENSSSCG00000006299 I 0.799
TBX19 Taeniopygia guttata ENSTGUG00000013434 I 0.778
tbx19 Tetraodon nigroviridis ENSTNIG00000006586 I 0.747
tbx19 Takifugu rubripes ENSTRUG00000005718 I 0.795
TBX19 Vicugna pacos ENSVPAG00000000446 I 0.799
tbxt Xenopus tropicalis XB-GENE-478789 I 0.779
tbxt.L Xenopus laevis XB-GENE-6255736 I 0.780
tbxt.S Xenopus laevis XB-GENE-865212 I 0.778
TriadG25521 Trichoplax adhaerens TriadG25521 I 0.768
XP_002164912.1 Hydra magnipapillata XP_002164912.1 I 0.796