Pvit_02210 (Pogona vitticeps)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 Pvit_02210 T341140_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TBX19
M03562_2.00 		Homo sapiens
NDTVRCACVTANGTGYKANN
NNTMRCACNTABGTGYBAHN		 SELEX
Jolma et al.(2013)
TBX19_1 		0.882 0.903
TBX19
M05803_2.00 		Homo sapiens
NAGGTGYBAHWDTMRCACNTN
NANGTGYKAHWDTVRCACCTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_HT-SELEX 		0.882 0.903
TBX19
M05804_2.00 		Homo sapiens
NANGTGYKAHWDTVRCACSTN
NASGTGYBAHWDTMRCACNTN		 SELEX
Yin et al.(2017)
TBX19_eDBD_Methyl-HT-SELEX 		0.882 0.903
T
M05809_2.00 		Homo sapiens
NANGTGYGAHWWNTVRCACCTN
NAGGTGYBANWWDTCRCACNTN		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_1 		0.855 0.840
T
M05810_2.00 		Homo sapiens
DTCRCAYVTABGTGYGAH
DTCRCACVTABRTGYGAH		 SELEX
Yin et al.(2017)
T_eDBD_HT-SELEX_2 		0.855 0.840
T
M09427_2.00 		Homo sapiens
BYNVCANNNVDGTGWKARDN
NHYTMWCACHBNNNTGBNRV		 Misc
Kulakovskiy et al.(2013)
BRAC_HUMAN.H11MO.0.A 		0.855 0.840
T
M09431_2.00 		Mus musculus
VVNRAWTTSACASNYHDVTGBNMAN
NTKNVCABHDRNSTGTSAAWTYNBB		 Misc
Kulakovskiy et al.(2013)
BRAC_MOUSE.H11MO.0.B 		0.855 0.840
T
M09651_2.00 		Mus musculus
NYTVDCASNNNNSTGHBARNN
NNYTVDCASNNNNSTGHBARN		 Misc
Heinz et al.(2010)
Mesoendoderm-Brachyury_GSE54963 		0.855 0.840
T
M11384_2.00 		Homo sapiens
MKHBTSACACSTAGGTGTGAAATK
MATTTCACACCTASGTGTSAVDMK		 Transfac
Matys et al.(2006)
V$BRACH_01 		0.855 0.840
T
M05811_2.00 		Homo sapiens
NABGTGYGAHWWNTVRCACSTN
NASGTGYBANWWDTCRCACVTN		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_1 		0.855 0.840
T
M05812_2.00 		Homo sapiens
DTMRCAYVTABGTGYKAH
DTMRCACVTABRTGYKAH		 SELEX
Yin et al.(2017)
T_eDBD_Methyl-HT-SELEX_2 		0.855 0.840
byn
M03984_2.00 		Drosophila melanogaster
ABGTGYGADDD
HHHTCRCACVT		 SELEX
Nitta et al.(2015)
byn_1 		0.815 0.743
byn
M03985_2.00 		Drosophila melanogaster
DNGTGYBAHWWDTVRCACNH
DNGTGYBAHWWDTVRCACNH		 SELEX
Nitta et al.(2015)
byn_2 		0.815 0.743
byn
M03986_2.00 		Drosophila melanogaster
RDGTGYGADNDNDNNNNNNDRDGTGYGADD
HHTCRCACHYHNNNNNNHNHNHTCRCACHY		 SELEX
Nitta et al.(2015)
byn_3 		0.815 0.743
byn
M03987_2.00 		Drosophila melanogaster
NNTMRCAYNWWNRTGYKAHN
NDTMRCAYNWWNRTGYKANN		 SELEX
Nitta et al.(2015)
byn_4 		0.815 0.743
byn
M06453_2.00 		Drosophila melanogaster
ADGTGCDA
THGCACHT		 B1H
Zhu et al.(2011)
byn_FlyReg_FBgn0011723 		0.815 0.743
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_02210 T-box 41 215

Links

Other T-box family TFs
Other Pogona vitticeps TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.000
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.000
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.000
Bo8g027000 Brassica oleracea Bo8g027000 I 0.000
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.000
Bra040971 Brassica rapa Bra040971 I 0.000
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.000
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.000
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.000
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.000
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.000
Ca_04300 Cicer arietinum Ca_04300 I 0.000
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.000
Cla016623 Citrullus lanatus Cla016623 I 0.000
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.000
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.000
F775_04088 Aegilops tauschii F775_04088 I 0.000
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.000
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.000
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.000
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.000
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.000
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.000
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.000
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I 0.000
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.000
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.000
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.000
MDP0000141403 Malus domestica MDP0000141403 I 0.000
MDP0000199559 Malus domestica MDP0000199559 I 0.000
MDP0000453148 Malus domestica MDP0000453148 I 0.000
MDP0000551046 Malus domestica MDP0000551046 I 0.000
MDP0000807856 Malus domestica MDP0000807856 I 0.000
mgf000060m Mimulus guttatus mgf000060m I 0.000
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.000
OB01G47470 Oryza brachyantha OB01G47470 I 0.000
OB03G47410 Oryza brachyantha OB03G47410 I 0.000
OBART01G38810 Oryza barthii OBART01G38810 I 0.000
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.000
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.000
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.000
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.000
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.000
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.000
OS01G0871200 Oryza sativa OS01G0871200 I 0.000
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.000
Pavir.J01834 Panicum virgatum Pavir.J01834 I 0.000
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.000
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.000
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.000
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I 0.000
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.000
PGSC0003DMG400026081 Solanum tuberosum PGSC0003DMG400026081 I 0.000
PK23301.1 Cannabis sativa PK23301.1 I 0.000
Pm022201 Prunus mume Pm022201 I 0.000
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.000
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.000
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.000
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.000
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.000
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.000
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.000
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.000
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I 0.000
SELMODRAFT_68340 Selaginella moellendorffii SELMODRAFT_68340 I 0.000
Si001053m.g Setaria italica Si001053m.g I 0.000
Si036555m.g Setaria italica Si036555m.g I 0.000
Solyc06g065440.1 Solanum lycopersicum Solyc06g065440.1 I 0.000
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.000
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.000
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.000
STOP1 Arabidopsis thaliana AT1G34370 D 0.000
TCM_036719 Theobroma cacao TCM_036719 I 0.000
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.000
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.000
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.000
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.000
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.000