CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ORGLA01G0346000 *(Oryza glaberrima)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	ORGLA01G0346000	T344181_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.967	0.914
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.957	0.743
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.957	0.743
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.957	0.743
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.957	0.743
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.954	0.743
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.954	0.771
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.953	0.771
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.944	0.786
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.944	0.786
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.939	0.757
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.938	0.786
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.938	0.786
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.938	0.786
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.938	0.786
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.937	0.743
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.937	0.729
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.931	0.757
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.930	0.743
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.927	0.729
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.927	0.729
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.927	0.729
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.927	0.729
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.926	0.714
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.923	0.714
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.923	0.714
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.922	0.700
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.922	0.700
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.922	0.700
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.921	0.714
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.921	0.700
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.909	0.657
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.909	0.643
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.849	0.571
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.849	0.571
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ORGLA01G0346000.1	TCP	123	192	PRNRDRHVKVEGRGRRIRMPVNCAARIGQLTRELGHKSDGETIRWLMQQSEPAIVAATGTGTVPAIATTV

Links
Other TCP family TFs
Other *Oryza glaberrima* TFs

655 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Afo_R005242	Aptenodytes forsteri	Afo_R005242	N	0.000
ENSAMEG00000007290	Ailuropoda melanoleuca	ENSAMEG00000007290	N	0.000
ENSAPLG00000012750	Anas platyrhynchos	ENSAPLG00000012750	N	0.000
ENSBTAP00000001994-D1	Bos grunniens	ENSBTAP00000001994-D1	N	0.000
ENSCSAG00000012442	Chlorocebus sabaeus	ENSCSAG00000012442	N	0.000
ENSFALG00000005635	Ficedula albicollis	ENSFALG00000005635	N	0.000
ENSMPUG00000008759	Mustela putorius furo	ENSMPUG00000008759	N	0.000
ENSNLEG00000003582	Nomascus leucogenys	ENSNLEG00000003582	N	0.000
ENSOARG00000005313	Ovis aries	ENSOARG00000005313	N	0.000
ENSP00000287025	Macaca fascicularis	ENSP00000287025	N	0.000
ENSPANG00000000418	Papio anubis	ENSPANG00000000418	N	0.000
ENSPPYG00000018764	Pongo abelii	ENSPPYG00000018764	N	0.000
ENSSHAG00000005026	Sarcophilus harrisii	ENSSHAG00000005026	N	0.000
ENSSTOG00000008021	Ictidomys tridecemlineatus	ENSSTOG00000008021	N	0.000
Gfo_R014552	Geospiza fortis	Gfo_R014552	N	0.000
MTERF3	Pan troglodytes	ENSPTRG00000020441	N	0.000
Mterf3	Rattus norvegicus	ENSRNOG00000004492	N	0.000
MTERF3	Procavia capensis	ENSPCAG00000009302	N	0.000
mterf3	Xenopus tropicalis	XB-GENE-6454740	N	0.000
MTERF3	Otolemur garnettii	ENSOGAG00000004303	N	0.000
MTERF3	Tupaia belangeri	ENSTBEG00000002615	N	0.000
MTERF3	Oryctolagus cuniculus	ENSOCUG00000004276	N	0.000
MTERF3	Tursiops truncatus	ENSTTRG00000007349	N	0.000
MTERF3	Vicugna pacos	ENSVPAG00000004132	N	0.000
MTERF3	Equus caballus	ENSECAG00000012943	N	0.000
MTERF3	Bos taurus	ENSBTAG00000001522	N	0.000
MTERF3	Canis familiaris	ENSCAFG00000009460	N	0.000
MTERF3	Choloepus hoffmanni	ENSCHOG00000007893	N	0.000
MTERF3	Callithrix jacchus	ENSCJAG00000020561	N	0.000
MTERF3	Cavia porcellus	ENSCPOG00000003487	N	0.000
MTERF3	Dasypus novemcinctus	ENSDNOG00000041739	N	0.000
Mterf3	Dipodomys ordii	ENSDORG00000010477	N	0.000
Mterf3	Mus musculus	ENSMUSG00000021519	N	0.000
MTERF3	Echinops telfairi	ENSETEG00000011372	N	0.000
MTERF3	Felis catus	ENSFCAG00000028511	N	0.000
MTERF3	Homo sapiens	ENSG00000156469	N	0.000
MTERF3	Gorilla gorilla	ENSGGOG00000011535	N	0.000
MTERF3	Loxodonta africana	ENSLAFG00000002544	N	0.000
MTERF3	Myotis lucifugus	ENSMLUG00000007186	N	0.000
MTERF3	Macaca mulatta	ENSMMUG00000008808	N	0.000
MTERF3	Monodelphis domestica	ENSMODG00000006966	N	0.000
Myotis_brandtii_MTERFD1_10032119	Myotis brandtii	Myotis_brandtii_MTERFD1_10032119	N	0.000

ORGLA01G0346000 (Oryza glaberrima) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

655 Related TFs

ORGLA01G0346000 **(Oryza glaberrima)
TCP**